8PVV
Archaeoglobus fulgidus AfAgo complex with AfAgo-N protein (fAfAgo) bound with 30 nt RNA guide and 51 nt DNA target
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Piwi protein | polymer | 427 | 49302.4 | 1 | UniProt (A0A101DYI0) Pfam (PF02171) UniProt (by SIFTS) (O28951) | Archaeoglobus fulgidus | |
| 2 | B (C) | Archaeoglobus fulgidus AfAgo-N protein | polymer | 273 | 31356.6 | 1 | UniProt (A0A075WKW4) | Archaeoglobus fulgidus DSM 8774 | |
| 3 | C (R) | RNA (30-MER) | polymer | 30 | 9793.0 | 1 | Escherichia coli | ||
| 4 | D (S) | DNA (51-MER) | polymer | 51 | 15579.9 | 1 | Escherichia coli | ||
| 5 | E (R) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 6 | F, G, H, I (A, C, R, S) | water | water | 18.0 | 36 | Chemie (HOH) |
Sequence modifications
C: 2 - 250 (UniProt: A0A075WKW4)
| PDB | External Database | Details |
|---|---|---|
| Met -22 | - | initiating methionine |
| Gly -21 | - | expression tag |
| Gly -20 | - | expression tag |
| Ser -19 | - | expression tag |
| His -18 | - | expression tag |
| His -17 | - | expression tag |
| His -16 | - | expression tag |
| His -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| Gly -12 | - | expression tag |
| Met -11 | - | expression tag |
| Ala -10 | - | expression tag |
| Ser -9 | - | expression tag |
| Glu -8 | - | expression tag |
| Asn -7 | - | expression tag |
| Leu -6 | - | expression tag |
| Tyr -5 | - | expression tag |
| Phe -4 | - | expression tag |
| Gln -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Gly 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 106031.9 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 24.3 | |
| All* | Total formula weight | 106056.2 |
