8PV4

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	C1	26S rRNA	polymer	3342	1080783.1	1		Thermochaetoides thermophila DSM 1495
2	C2	5.8S rRNA	polymer	156	50147.7	1	GenBank (MT316345.1)	Thermochaetoides thermophila DSM 1495
3	C3	ITS2	polymer	162	52085.8	1	GenBank (261599337)	Thermochaetoides thermophila DSM 1495
4	C4	5S rRNA	polymer	119	38312.7	1		Thermochaetoides thermophila DSM 1495
5	CB	Utp30	polymer	391	43700.5	1	UniProt (G0S7X0) Pfam (PF00687) In PDB	Thermochaetoides thermophila DSM 1495
6	CF	Large ribosomal subunit protein uL10	polymer	270	30526.5	1	UniProt (G0S616) Pfam (PF00466) Pfam (PF17777) In PDB	Thermochaetoides thermophila DSM 1495	Ribosome assembly factor mrt4,mRNA turnover protein 4
7	CH	Nucleolar GTP-binding protein 1	polymer	661	75621.5	1	UniProt (G0S8F1) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155) In PDB	Thermochaetoides thermophila DSM 1495
8	CI	Putative RNA-binding protein	polymer	414	45884.4	1	UniProt (G0S1H0) Pfam (PF00076) In PDB	Thermochaetoides thermophila DSM 1495
9	CJ	Pescadillo homolog	polymer	679	77167.3	1	UniProt (G0SHX6) Pfam (PF06732) Pfam (PF00533) In PDB	Thermochaetoides thermophila DSM 1495	Nucleolar protein 7 homolog
10	CK	Ribosome biogenesis protein NSA2 homolog	polymer	261	29724.6	1	UniProt (G0S081) Pfam (PF01201) In PDB	Thermochaetoides thermophila DSM 1495
11	CL	Putative GTP binding protein	polymer	558	61479.9	1	UniProt (G0SEW3) Pfam (PF08701) Pfam (PF01926) In PDB	Thermochaetoides thermophila DSM 1495
12	CM, LF	60S ribosomal protein l7-like protein	polymer	249	28821.8	2	UniProt (G0SFL0) Pfam (PF08079) Pfam (PF00327) In PDB	Thermochaetoides thermophila DSM 1495
13	CN	Eukaryotic translation initiation factor 6	polymer	246	26468.8	1	UniProt (G0S683) Pfam (PF01912) In PDB	Thermochaetoides thermophila DSM 1495	eIF-6
14	CO	DUF2423 domain-containing protein	polymer	120	13262.4	1	UniProt (G0SHK0) Pfam (PF10338) In PDB	Thermochaetoides thermophila DSM 1495
15	CQ	Ribosome biogenesis protein RLP24	polymer	225	26434.3	1	UniProt (G0S497) Pfam (PF01246) In PDB	Thermochaetoides thermophila DSM 1495
16	CS	Pre-rRNA-processing protein IPI1	polymer	338	37440.0	1	UniProt (P0CT45) Pfam (PF12333) In PDB	Thermochaetoides thermophila DSM 1495
17	CT, CU	Pre-rRNA-processing protein IPI3	polymer	437	47627.8	2	UniProt (G0S1T5) Pfam (PF00400) In PDB	Thermochaetoides thermophila DSM 1495
18	CV, CW	Pre-rRNA-processing protein RIX1	polymer	781	84849.2	2	UniProt (G0S5R0) Pfam (PF08167) In PDB	Thermochaetoides thermophila DSM 1495
19	Cb	Zinc finger domain-containing protein	polymer	117	13710.8	1	UniProt (G0SB32) Pfam (PF12171) In PDB	Thermochaetoides thermophila DSM 1495
20	Cd	Nucleolar GTP-binding protein 2	polymer	627	70313.1	1	UniProt (G0SBX1) Pfam (PF08153) Pfam (PF01926) In PDB	Thermochaetoides thermophila DSM 1495
21	Ce	Ribosome biogenesis protein NOP53	polymer	443	50981.3	1	UniProt (G0S495) Pfam (PF07767) In PDB	Thermochaetoides thermophila DSM 1495
22	Cf	Ribosome production factor 2 homolog	polymer	350	39927.3	1	UniProt (G0SF80) Pfam (PF04427) In PDB	Thermochaetoides thermophila DSM 1495	Ribosome biogenesis protein RPF2 homolog
23	Cg	Ribosome biogenesis regulatory protein	polymer	202	22817.3	1	UniProt (G0SCH6) Pfam (PF04939) In PDB	Thermochaetoides thermophila DSM 1495
24	Ch	Ribosome assembly protein 4	polymer	517	57620.7	1	UniProt (G0SC29) Pfam (PF00400) In PDB	Thermochaetoides thermophila DSM 1495	Notchless protein homolog 1,Ribosome biogenesis factor RSA4
25	Cz	rRNA-processing protein	polymer	123	14710.4	1	UniProt (G0SCP3) Pfam (PF03879) In PDB	Thermochaetoides thermophila DSM 1495
26	LA	60S ribosomal protein L2-like protein	polymer	254	27598.9	1	UniProt (G0S4P8) Pfam (PF00181) Pfam (PF03947) In PDB	Thermochaetoides thermophila DSM 1495
27	LB	60S ribosomal protein L3-like protein	polymer	392	44456.9	1	UniProt (G0RXW1) Pfam (PF00297) In PDB	Thermochaetoides thermophila DSM 1495
28	LC	60S ribosomal protein L4-like protein	polymer	365	39439.9	1	UniProt (G0SFC3) Pfam (PF00573) Pfam (PF14374) In PDB	Thermochaetoides thermophila DSM 1495
29	LD	60S ribosomal protein l5-like protein	polymer	304	35034.6	1	UniProt (G0SEG2) Pfam (PF17144) Pfam (PF14204) In PDB	Thermochaetoides thermophila DSM 1495
30	LE	60S ribosomal protein L6	polymer	200	22133.0	1	UniProt (G0S0D6) Pfam (PF01159) In PDB	Thermochaetoides thermophila DSM 1495
31	LG	60S ribosomal protein L8	polymer	262	29744.5	1	UniProt (G0SAJ9) Pfam (PF01248) In PDB	Thermochaetoides thermophila DSM 1495
32	LH	60S ribosomal protein l9-like protein	polymer	229	25867.9	1		Thermochaetoides thermophila DSM 1495
33	LJ	Putative ribosomal protein	polymer	173	20119.3	1	UniProt (G0SHQ2) Pfam (PF00281) Pfam (PF00673) In PDB	Thermochaetoides thermophila DSM 1495
34	LK	60S ribosomal protein L12-like protein	polymer	165	17802.7	1	UniProt (G0SGH8) Pfam (PF03946) Pfam (PF00298) In PDB	Thermochaetoides thermophila DSM 1495
35	LL	60S ribosomal protein L13	polymer	213	24191.2	1	UniProt (G0S992) Pfam (PF01294) In PDB	Thermochaetoides thermophila DSM 1495
36	LM	60S ribosomal protein L14-like protein	polymer	142	16111.9	1	UniProt (G0S1R0) Pfam (PF01929) In PDB	Thermochaetoides thermophila DSM 1495
37	LN	Ribosomal protein L15	polymer	203	24307.3	1	UniProt (G0RZ88) Pfam (PF00827) In PDB	Thermochaetoides thermophila DSM 1495
38	LO	60S ribosomal protein L16-like protein	polymer	204	22993.2	1	UniProt (G0SH61) Pfam (PF00572) In PDB	Thermochaetoides thermophila DSM 1495
39	LP	60S ribosomal protein l17-like protein	polymer	187	21072.2	1	UniProt (G0SGY1) Pfam (PF00237) In PDB	Thermochaetoides thermophila DSM 1495
40	LQ	Ribosomal protein L18-like protein	polymer	213	24195.5	1	UniProt (G0S9B5) Pfam (PF17135) In PDB	Thermochaetoides thermophila DSM 1495
41	LR	Ribosomal protein L19	polymer	2898	317092.3	1	UniProt (G0S9T3) Pfam (PF12074) Pfam (PF13513) Pfam (PF21040) Pfam (PF10274) Pfam (PF01280) In PDB	Thermochaetoides thermophila DSM 1495
42	LS	60S ribosomal protein L20	polymer	174	20341.9	1	UniProt (G0SCE2) Pfam (PF01775) In PDB	Thermochaetoides thermophila DSM 1495
43	LT	60S ribosomal protein l21-like protein	polymer	160	18159.2	1	UniProt (G0S0Z3) Pfam (PF01157) In PDB	Thermochaetoides thermophila DSM 1495
44	LU	60S ribosomal protein L22-like protein	polymer	127	14302.6	1	UniProt (G0SDS8) Pfam (PF01776) In PDB	Thermochaetoides thermophila DSM 1495
45	LV	60S ribosomal protein l23-like protein	polymer	139	14674.4	1	UniProt (G0SI44) Pfam (PF00238) In PDB	Thermochaetoides thermophila DSM 1495
46	LX	60S ribosomal protein L25-like protein	polymer	156	17175.3	1	UniProt (G0S507) Pfam (PF03939) Pfam (PF00276) In PDB	Thermochaetoides thermophila DSM 1495
47	LY	60S ribosomal protein L26-like protein	polymer	138	15565.3	1	UniProt (G0RYN9) Pfam (PF16906) Pfam (PF00467) In PDB	Thermochaetoides thermophila DSM 1495
48	LZ	60S ribosomal protein L27	polymer	135	15803.7	1	UniProt (G0RZE9) Pfam (PF01777) In PDB	Thermochaetoides thermophila DSM 1495
49	La	60S ribosomal protein L28-like protein	polymer	149	16848.5	1		Thermochaetoides thermophila DSM 1495
50	Lc	60S ribosomal protein l30-like protein	polymer	108	11602.6	1	UniProt (G0SEI0) Pfam (PF01248) In PDB	Thermochaetoides thermophila DSM 1495
51	Ld	Putative 60S ribosomal protein	polymer	120	13872.2	1	UniProt (G0SD68) Pfam (PF01198) In PDB	Thermochaetoides thermophila DSM 1495
52	Le	60S ribosomal protein L32-like protein	polymer	131	15096.0	1	UniProt (G0S6V4) Pfam (PF01655) In PDB	Thermochaetoides thermophila DSM 1495
53	Lf	60S ribosomal protein l33-like protein	polymer	109	12330.3	1	UniProt (G0SCL3) Pfam (PF01247) In PDB	Thermochaetoides thermophila DSM 1495
54	Lg	Ribosomal protein l34-like protein	polymer	119	13493.0	1	UniProt (G0SFN0) Pfam (PF01199) In PDB	Thermochaetoides thermophila DSM 1495
55	Lh	dolichyl-diphosphooligosaccharide--protein glycotransferase	polymer	935	105169.2	1	UniProt (G0S0D7) Pfam (PF00831) Pfam (PF02516) Pfam (PF21436) In PDB	Thermochaetoides thermophila DSM 1495
56	Li	60S ribosomal protein L36	polymer	110	12784.1	1	UniProt (G0SBN1) Pfam (PF01158) In PDB	Thermochaetoides thermophila DSM 1495
57	Lj	Ribosomal protein L37	polymer	95	10660.5	1	UniProt (G0S101) Pfam (PF01907) In PDB	Thermochaetoides thermophila DSM 1495
58	Lk	60S ribosomal protein L38-like protein	polymer	94	10902.0	1	UniProt (G0SG89) Pfam (PF01781) In PDB	Thermochaetoides thermophila DSM 1495
59	Ll	Ribosomal protein eL39	polymer	51	6297.5	1	UniProt (Q2H9R2) Pfam (PF00832) In PDB	Thermochaetoides thermophila DSM 1495
60	Lp	60S ribosomal protein L43-like protein	polymer	92	10159.0	1	UniProt (G0S6B0) Pfam (PF01780) In PDB	Thermochaetoides thermophila DSM 1495
61	Lq	Putative 60S ribosomal protein	polymer	147	15960.5	1	UniProt (G0SHJ6) Pfam (PF01778) In PDB	Thermochaetoides thermophila DSM 1495
62	Lr	Ribosomal protein	polymer	217	24055.3	1	UniProt (G0S4Z9) Pfam (PF00687) In PDB	Thermochaetoides thermophila DSM 1495
63	CR	Protein SDA1	polymer	767	86963.5	1	UniProt (G0S215) Pfam (PF08158) Pfam (PF05285) Pfam (PF21638) In PDB	Thermochaetoides thermophila DSM 1495
64	CH, Cd	GUANOSINE-5'-TRIPHOSPHATE	non-polymer		523.2	2	Chemie (GTP)
65	CH, Cd	MAGNESIUM ION	non-polymer		24.3	3	Chemie (MG)
66	CQ, Cb, Lg, Lj, Lp	ZINC ION	non-polymer		65.4	5	Chemie (ZN)
67		water	water		18.0	3	Chemie (HOH)

Sequence modifications

Ch: 1 - 517 (UniProt: G0SC29)

PDB	External Database	Details
Asp 117	Glu 117	engineered mutation

Contents of the asymmetric unit

Polymers	Number of chains	66
	Total formula weight	3476096.0
Non-Polymers*	Number of molecules	10
	Total formula weight	1446.3
All*	Total formula weight	3477542.3

*Water molecules are not included.