8PV2
Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C1) | 26S rRNA | polymer | 3338 | 1079498.1 | 1 | GenBank (XR_002966752) | Thermochaetoides thermophila DSM 1495 | |
| 2 | B (C2) | 5.8S rRNA | polymer | 156 | 50147.7 | 1 | GenBank (MT316345.1) | Thermochaetoides thermophila DSM 1495 | |
| 3 | C (C4) | 5S rRNA | polymer | 119 | 38312.7 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 4 | D (CF) | Large ribosomal subunit protein uL10 | polymer | 270 | 30526.5 | 1 | UniProt (G0S616) Pfam (PF17777) Pfam (PF00466) | Thermochaetoides thermophila DSM 1495 | Ribosome assembly factor mrt4,mRNA turnover protein 4 |
| 5 | E (CH) | Nucleolar GTP-binding protein 1 | polymer | 661 | 75621.5 | 1 | UniProt (G0S8F1) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155) | Thermochaetoides thermophila DSM 1495 | |
| 6 | F (CK) | Ribosome biogenesis protein NSA2 homolog | polymer | 261 | 29724.6 | 1 | UniProt (G0S081) Pfam (PF01201) | Thermochaetoides thermophila DSM 1495 | |
| 7 | G (CL) | Putative GTP binding protein | polymer | 558 | 61479.9 | 1 | UniProt (G0SEW3) Pfam (PF08701) Pfam (PF01926) | Thermochaetoides thermophila DSM 1495 | |
| 8 | H (CN) | Eukaryotic translation initiation factor 6 | polymer | 246 | 26468.8 | 1 | UniProt (G0S683) Pfam (PF01912) | Thermochaetoides thermophila DSM 1495 | eIF-6 |
| 9 | I (CO) | DUF2423 domain-containing protein | polymer | 120 | 13262.4 | 1 | UniProt (G0SHK0) Pfam (PF10338) | Thermochaetoides thermophila DSM 1495 | |
| 10 | J (CQ) | Ribosome biogenesis protein RLP24 | polymer | 225 | 26434.3 | 1 | UniProt (G0S497) Pfam (PF01246) | Thermochaetoides thermophila DSM 1495 | |
| 11 | K (Cb) | Zinc finger domain-containing protein | polymer | 117 | 13710.8 | 1 | UniProt (G0SB32) Pfam (PF12171) | Thermochaetoides thermophila DSM 1495 | |
| 12 | L (Cd) | Nucleolar GTP-binding protein 2 | polymer | 627 | 70313.1 | 1 | UniProt (G0SBX1) Pfam (PF08153) Pfam (PF01926) | Thermochaetoides thermophila DSM 1495 | |
| 13 | M (Cf) | Ribosome production factor 2 homolog | polymer | 350 | 39927.3 | 1 | UniProt (G0SF80) Pfam (PF04427) | Thermochaetoides thermophila DSM 1495 | Ribosome biogenesis protein RPF2 homolog |
| 14 | N (Cg) | Ribosome biogenesis regulatory protein | polymer | 202 | 22817.3 | 1 | UniProt (G0SCH6) Pfam (PF04939) | Thermochaetoides thermophila DSM 1495 | |
| 15 | O (Ch) | Ribosome assembly protein 4 | polymer | 517 | 57620.7 | 1 | UniProt (G0SC29) Pfam (PF00400) | Thermochaetoides thermophila DSM 1495 | Notchless protein homolog 1,Ribosome biogenesis factor RSA4 |
| 16 | P (Cz) | rRNA-processing protein | polymer | 123 | 14710.4 | 1 | UniProt (G0SCP3) Pfam (PF03879) | Thermochaetoides thermophila DSM 1495 | |
| 17 | Q (LA) | 60S ribosomal protein L2-like protein | polymer | 254 | 27598.9 | 1 | UniProt (G0S4P8) Pfam (PF00181) Pfam (PF03947) | Thermochaetoides thermophila DSM 1495 | |
| 18 | R (LB) | 60S ribosomal protein L3-like protein | polymer | 392 | 44456.9 | 1 | UniProt (G0RXW1) Pfam (PF00297) | Thermochaetoides thermophila DSM 1495 | |
| 19 | S (LC) | 60S ribosomal protein L4-like protein | polymer | 365 | 39439.9 | 1 | UniProt (G0SFC3) Pfam (PF00573) Pfam (PF14374) | Thermochaetoides thermophila DSM 1495 | |
| 20 | T (LD) | 60S ribosomal protein l5-like protein | polymer | 304 | 35034.6 | 1 | UniProt (G0SEG2) Pfam (PF17144) Pfam (PF14204) | Thermochaetoides thermophila DSM 1495 | |
| 21 | U (LE) | 60S ribosomal protein L6 | polymer | 200 | 22133.0 | 1 | UniProt (G0S0D6) Pfam (PF01159) | Thermochaetoides thermophila DSM 1495 | |
| 22 | EB, V (LF, CM) | 60S ribosomal protein l7-like protein | polymer | 249 | 28821.8 | 2 | UniProt (G0SFL0) Pfam (PF08079) Pfam (PF00327) | Thermochaetoides thermophila DSM 1495 | |
| 23 | W (LG) | 60S ribosomal protein L8 | polymer | 262 | 29744.5 | 1 | UniProt (G0SAJ9) Pfam (PF01248) | Thermochaetoides thermophila DSM 1495 | |
| 24 | X (LH) | 60S ribosomal protein l9-like protein | polymer | 229 | 25867.9 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 25 | Y (LJ) | Putative ribosomal protein | polymer | 173 | 20119.3 | 1 | UniProt (G0SHQ2) Pfam (PF00281) Pfam (PF00673) | Thermochaetoides thermophila DSM 1495 | |
| 26 | Z (LK) | 60S ribosomal protein L12-like protein | polymer | 165 | 17802.7 | 1 | UniProt (G0SGH8) Pfam (PF03946) Pfam (PF00298) | Thermochaetoides thermophila DSM 1495 | |
| 27 | AA (LL) | 60S ribosomal protein L13 | polymer | 213 | 24191.2 | 1 | UniProt (G0S992) Pfam (PF01294) | Thermochaetoides thermophila DSM 1495 | |
| 28 | BA (LM) | 60S ribosomal protein L14-like protein | polymer | 142 | 16111.9 | 1 | UniProt (G0S1R0) Pfam (PF01929) | Thermochaetoides thermophila DSM 1495 | |
| 29 | CA (LN) | Ribosomal protein L15 | polymer | 203 | 24307.3 | 1 | UniProt (G0RZ88) Pfam (PF00827) | Thermochaetoides thermophila DSM 1495 | |
| 30 | DA (LO) | 60S ribosomal protein L16-like protein | polymer | 204 | 22993.2 | 1 | UniProt (G0SH61) Pfam (PF00572) | Thermochaetoides thermophila DSM 1495 | |
| 31 | EA (LP) | 60S ribosomal protein l17-like protein | polymer | 187 | 21072.2 | 1 | UniProt (G0SGY1) Pfam (PF00237) | Thermochaetoides thermophila DSM 1495 | |
| 32 | FA (LQ) | Ribosomal protein L18-like protein | polymer | 213 | 24195.5 | 1 | UniProt (G0S9B5) Pfam (PF17135) | Thermochaetoides thermophila DSM 1495 | |
| 33 | GA (LR) | Ribosomal protein L19 | polymer | 2898 | 317092.3 | 1 | UniProt (G0S9T3) Pfam (PF12074) Pfam (PF13513) Pfam (PF21040) Pfam (PF10274) Pfam (PF01280) | Thermochaetoides thermophila DSM 1495 | |
| 34 | HA (LS) | 60S ribosomal protein L20 | polymer | 174 | 20341.9 | 1 | UniProt (G0SCE2) Pfam (PF01775) | Thermochaetoides thermophila DSM 1495 | |
| 35 | IA (LT) | 60S ribosomal protein l21-like protein | polymer | 160 | 18159.2 | 1 | UniProt (G0S0Z3) Pfam (PF01157) | Thermochaetoides thermophila DSM 1495 | |
| 36 | JA (LU) | 60S ribosomal protein L22-like protein | polymer | 127 | 14302.6 | 1 | UniProt (G0SDS8) Pfam (PF01776) | Thermochaetoides thermophila DSM 1495 | |
| 37 | KA (LV) | 60S ribosomal protein l23-like protein | polymer | 139 | 14674.4 | 1 | UniProt (G0SI44) Pfam (PF00238) | Thermochaetoides thermophila DSM 1495 | |
| 38 | LA (LX) | 60S ribosomal protein L25-like protein | polymer | 156 | 17175.3 | 1 | UniProt (G0S507) Pfam (PF03939) Pfam (PF00276) | Thermochaetoides thermophila DSM 1495 | |
| 39 | MA (LY) | 60S ribosomal protein L26-like protein | polymer | 138 | 15565.3 | 1 | UniProt (G0RYN9) Pfam (PF16906) Pfam (PF00467) | Thermochaetoides thermophila DSM 1495 | |
| 40 | NA (LZ) | 60S ribosomal protein L27 | polymer | 135 | 15803.7 | 1 | UniProt (G0RZE9) Pfam (PF01777) | Thermochaetoides thermophila DSM 1495 | |
| 41 | OA (La) | 60S ribosomal protein L28-like protein | polymer | 149 | 16848.5 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 42 | PA (Lc) | 60S ribosomal protein l30-like protein | polymer | 108 | 11602.6 | 1 | UniProt (G0SEI0) Pfam (PF01248) | Thermochaetoides thermophila DSM 1495 | |
| 43 | QA (Ld) | Putative 60S ribosomal protein | polymer | 120 | 13872.2 | 1 | UniProt (G0SD68) Pfam (PF01198) | Thermochaetoides thermophila DSM 1495 | |
| 44 | RA (Le) | 60S ribosomal protein L32-like protein | polymer | 131 | 15096.0 | 1 | UniProt (G0S6V4) Pfam (PF01655) | Thermochaetoides thermophila DSM 1495 | |
| 45 | SA (Lf) | 60S ribosomal protein l33-like protein | polymer | 109 | 12330.3 | 1 | UniProt (G0SCL3) Pfam (PF01247) | Thermochaetoides thermophila DSM 1495 | |
| 46 | TA (Lg) | Ribosomal protein l34-like protein | polymer | 119 | 13493.0 | 1 | UniProt (G0SFN0) Pfam (PF01199) | Thermochaetoides thermophila DSM 1495 | |
| 47 | UA (Lh) | dolichyl-diphosphooligosaccharide--protein glycotransferase | polymer | 935 | 105169.2 | 1 | UniProt (G0S0D7) Pfam (PF00831) Pfam (PF02516) Pfam (PF21436) | Thermochaetoides thermophila DSM 1495 | |
| 48 | VA (Li) | 60S ribosomal protein L36 | polymer | 110 | 12784.1 | 1 | UniProt (G0SBN1) Pfam (PF01158) | Thermochaetoides thermophila DSM 1495 | |
| 49 | WA (Lj) | Ribosomal protein L37 | polymer | 95 | 10660.5 | 1 | UniProt (G0S101) Pfam (PF01907) | Thermochaetoides thermophila DSM 1495 | |
| 50 | XA (Lk) | 60S ribosomal protein L38-like protein | polymer | 94 | 10902.0 | 1 | UniProt (G0SG89) Pfam (PF01781) | Thermochaetoides thermophila DSM 1495 | |
| 51 | YA (Ll) | Ribosomal protein eL39 | polymer | 51 | 6297.5 | 1 | UniProt (Q2H9R2) Pfam (PF00832) | Thermochaetoides thermophila DSM 1495 | |
| 52 | ZA (Lp) | 60S ribosomal protein L43-like protein | polymer | 92 | 10159.0 | 1 | UniProt (G0S6B0) Pfam (PF01780) | Thermochaetoides thermophila DSM 1495 | |
| 53 | AB (Lq) | Putative 60S ribosomal protein | polymer | 147 | 15960.5 | 1 | UniProt (G0SHJ6) Pfam (PF01778) | Thermochaetoides thermophila DSM 1495 | |
| 54 | BB (CC) | Ribosome biogenesis protein ERB1 | polymer | 801 | 90838.0 | 1 | UniProt (G0SCK6) Pfam (PF08145) Pfam (PF00400) | Thermochaetoides thermophila DSM 1495 | Eukaryotic ribosome biogenesis protein 1 |
| 55 | CB (CD) | Ribosome biogenesis protein YTM1 | polymer | 495 | 53003.3 | 1 | UniProt (G0SFB5) Pfam (PF08154) Pfam (PF00400) | Thermochaetoides thermophila DSM 1495 | |
| 56 | DB (CJ) | Pescadillo homolog | polymer | 679 | 77167.3 | 1 | UniProt (G0SHX6) Pfam (PF06732) Pfam (PF00533) | Thermochaetoides thermophila DSM 1495 | Nucleolar protein 7 homolog |
| 57 | FB, JB (CH, Cd) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 2 | Chemie (GTP) | |||
| 58 | GB, KB, LB (CH, Cd) | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) | |||
| 59 | HB, IB, MB, NB, OB (CQ, Cb, Lg, Lj, Lp) | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
| 60 | PB, QB (CH, Cd) | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
C1: 1 - 3337 (GenBank: XR_002966752)
Ch: 1 - 517 (UniProt: G0SC29)
| PDB | External Database | Details |
|---|---|---|
| C 3338 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Asp 117 | Glu 117 | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 57 |
| Total formula weight | 3012587.4 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 1446.3 | |
| All* | Total formula weight | 3014033.7 |
