8PV1
Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C1) | 26S rRNA | polymer | 3342 | 1080783.1 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 2 | B (C2) | 5.8S rRNA | polymer | 156 | 50147.7 | 1 | GenBank (MT316345.1) | Thermochaetoides thermophila DSM 1495 | |
| 3 | C (C3) | ITS2 | polymer | 162 | 52085.8 | 1 | GenBank (1373509168) | Thermochaetoides thermophila DSM 1495 | |
| 4 | D (C4) | 5S rRNA | polymer | 119 | 38312.7 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 5 | E (CB) | Utp30 | polymer | 391 | 43700.5 | 1 | UniProt (G0S7X0) Pfam (PF00687) | Thermochaetoides thermophila DSM 1495 | |
| 6 | F (CF) | Large ribosomal subunit protein uL10 | polymer | 270 | 30526.5 | 1 | UniProt (G0S616) Pfam (PF00466) Pfam (PF17777) | Thermochaetoides thermophila DSM 1495 | Ribosome assembly factor mrt4,mRNA turnover protein 4 |
| 7 | G (CH) | Nucleolar GTP-binding protein 1 | polymer | 661 | 75621.5 | 1 | UniProt (G0S8F1) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155) | Thermochaetoides thermophila DSM 1495 | |
| 8 | H (CI) | Putative RNA-binding protein | polymer | 414 | 45884.4 | 1 | UniProt (G0S1H0) Pfam (PF00076) | Thermochaetoides thermophila DSM 1495 | |
| 9 | I (CJ) | Pescadillo homolog | polymer | 679 | 77167.3 | 1 | UniProt (G0SHX6) Pfam (PF06732) Pfam (PF00533) | Thermochaetoides thermophila DSM 1495 | Nucleolar protein 7 homolog |
| 10 | J (CK) | Ribosome biogenesis protein NSA2 homolog | polymer | 261 | 29724.6 | 1 | UniProt (G0S081) Pfam (PF01201) | Thermochaetoides thermophila DSM 1495 | |
| 11 | K (CL) | Putative GTP binding protein | polymer | 558 | 61479.9 | 1 | UniProt (G0SEW3) Pfam (PF08701) Pfam (PF01926) | Thermochaetoides thermophila DSM 1495 | |
| 12 | BA, L (CM, LF) | 60S ribosomal protein l7-like protein | polymer | 249 | 28821.8 | 2 | UniProt (G0SFL0) Pfam (PF08079) Pfam (PF00327) | Thermochaetoides thermophila DSM 1495 | |
| 13 | M (CN) | Eukaryotic translation initiation factor 6 | polymer | 246 | 26468.8 | 1 | UniProt (G0S683) Pfam (PF01912) | Thermochaetoides thermophila DSM 1495 | eIF-6 |
| 14 | N (CO) | DUF2423 domain-containing protein | polymer | 120 | 13262.4 | 1 | UniProt (G0SHK0) Pfam (PF10338) | Thermochaetoides thermophila DSM 1495 | |
| 15 | O (CQ) | Ribosome biogenesis protein RLP24 | polymer | 225 | 26434.3 | 1 | UniProt (G0S497) Pfam (PF01246) | Thermochaetoides thermophila DSM 1495 | |
| 16 | P (Cb) | Zinc finger domain-containing protein | polymer | 117 | 13710.8 | 1 | UniProt (G0SB32) Pfam (PF12171) | Thermochaetoides thermophila DSM 1495 | |
| 17 | Q (Cd) | Nucleolar GTP-binding protein 2 | polymer | 627 | 70313.1 | 1 | UniProt (G0SBX1) Pfam (PF08153) Pfam (PF01926) | Thermochaetoides thermophila DSM 1495 | |
| 18 | R (Ce) | Ribosome biogenesis protein NOP53 | polymer | 443 | 50981.3 | 1 | UniProt (G0S495) Pfam (PF07767) | Thermochaetoides thermophila DSM 1495 | |
| 19 | S (Cf) | Ribosome production factor 2 homolog | polymer | 350 | 39927.3 | 1 | UniProt (G0SF80) Pfam (PF04427) | Thermochaetoides thermophila DSM 1495 | Ribosome biogenesis protein RPF2 homolog |
| 20 | T (Cg) | Ribosome biogenesis regulatory protein | polymer | 202 | 22817.3 | 1 | UniProt (G0SCH6) Pfam (PF04939) | Thermochaetoides thermophila DSM 1495 | |
| 21 | U (Ch) | Ribosome assembly protein 4 | polymer | 517 | 57620.7 | 1 | UniProt (G0SC29) Pfam (PF00400) | Thermochaetoides thermophila DSM 1495 | Notchless protein homolog 1,Ribosome biogenesis factor RSA4 |
| 22 | V (Cz) | rRNA-processing protein | polymer | 123 | 14710.4 | 1 | UniProt (G0SCP3) Pfam (PF03879) | Thermochaetoides thermophila DSM 1495 | |
| 23 | W (LA) | 60S ribosomal protein L2-like protein | polymer | 254 | 27598.9 | 1 | UniProt (G0S4P8) Pfam (PF00181) Pfam (PF03947) | Thermochaetoides thermophila DSM 1495 | |
| 24 | X (LB) | 60S ribosomal protein L3-like protein | polymer | 392 | 44456.9 | 1 | UniProt (G0RXW1) Pfam (PF00297) | Thermochaetoides thermophila DSM 1495 | |
| 25 | Y (LC) | 60S ribosomal protein L4-like protein | polymer | 365 | 39439.9 | 1 | UniProt (G0SFC3) Pfam (PF00573) Pfam (PF14374) | Thermochaetoides thermophila DSM 1495 | |
| 26 | Z (LD) | 60S ribosomal protein l5-like protein | polymer | 304 | 35034.6 | 1 | UniProt (G0SEG2) Pfam (PF17144) Pfam (PF14204) | Thermochaetoides thermophila DSM 1495 | |
| 27 | AA (LE) | 60S ribosomal protein L6 | polymer | 200 | 22133.0 | 1 | UniProt (G0S0D6) Pfam (PF01159) | Thermochaetoides thermophila DSM 1495 | |
| 28 | CA (LG) | 60S ribosomal protein L8 | polymer | 262 | 29744.5 | 1 | UniProt (G0SAJ9) Pfam (PF01248) | Thermochaetoides thermophila DSM 1495 | |
| 29 | DA (LH) | 60S ribosomal protein l9-like protein | polymer | 229 | 25867.9 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 30 | EA (LJ) | Putative ribosomal protein | polymer | 173 | 20119.3 | 1 | UniProt (G0SHQ2) Pfam (PF00281) Pfam (PF00673) | Thermochaetoides thermophila DSM 1495 | |
| 31 | FA (LK) | 60S ribosomal protein L12-like protein | polymer | 165 | 17802.7 | 1 | UniProt (G0SGH8) Pfam (PF03946) Pfam (PF00298) | Thermochaetoides thermophila DSM 1495 | |
| 32 | GA (LL) | 60S ribosomal protein L13 | polymer | 213 | 24191.2 | 1 | UniProt (G0S992) Pfam (PF01294) | Thermochaetoides thermophila DSM 1495 | |
| 33 | HA (LM) | 60S ribosomal protein L14-like protein | polymer | 142 | 16111.9 | 1 | UniProt (G0S1R0) Pfam (PF01929) | Thermochaetoides thermophila DSM 1495 | |
| 34 | IA (LN) | Ribosomal protein L15 | polymer | 203 | 24307.3 | 1 | UniProt (G0RZ88) Pfam (PF00827) | Thermochaetoides thermophila DSM 1495 | |
| 35 | JA (LO) | 60S ribosomal protein L16-like protein | polymer | 204 | 22993.2 | 1 | UniProt (G0SH61) Pfam (PF00572) | Thermochaetoides thermophila DSM 1495 | |
| 36 | KA (LP) | 60S ribosomal protein l17-like protein | polymer | 187 | 21072.2 | 1 | UniProt (G0SGY1) Pfam (PF00237) | Thermochaetoides thermophila DSM 1495 | |
| 37 | LA (LQ) | Ribosomal protein L18-like protein | polymer | 213 | 24195.5 | 1 | UniProt (G0S9B5) Pfam (PF17135) | Thermochaetoides thermophila DSM 1495 | |
| 38 | MA (LR) | Ribosomal protein L19 | polymer | 2898 | 317092.3 | 1 | UniProt (G0S9T3) Pfam (PF24993) Pfam (PF12074) Pfam (PF24916) Pfam (PF24987) Pfam (PF24984) Pfam (PF21040) Pfam (PF23271) Pfam (PF10274) Pfam (PF25801) Pfam (PF01280) Pfam (PF25476) | Thermochaetoides thermophila DSM 1495 | |
| 39 | NA (LS) | 60S ribosomal protein L20 | polymer | 174 | 20341.9 | 1 | UniProt (G0SCE2) Pfam (PF01775) | Thermochaetoides thermophila DSM 1495 | |
| 40 | OA (LT) | 60S ribosomal protein l21-like protein | polymer | 160 | 18159.2 | 1 | UniProt (G0S0Z3) Pfam (PF01157) | Thermochaetoides thermophila DSM 1495 | |
| 41 | PA (LU) | 60S ribosomal protein L22-like protein | polymer | 127 | 14302.6 | 1 | UniProt (G0SDS8) Pfam (PF01776) | Thermochaetoides thermophila DSM 1495 | |
| 42 | QA (LV) | 60S ribosomal protein l23-like protein | polymer | 139 | 14674.4 | 1 | UniProt (G0SI44) Pfam (PF00238) | Thermochaetoides thermophila DSM 1495 | |
| 43 | RA (LX) | 60S ribosomal protein L25-like protein | polymer | 156 | 17175.3 | 1 | UniProt (G0S507) Pfam (PF03939) Pfam (PF00276) | Thermochaetoides thermophila DSM 1495 | |
| 44 | SA (LY) | 60S ribosomal protein L26-like protein | polymer | 138 | 15565.3 | 1 | UniProt (G0RYN9) Pfam (PF16906) Pfam (PF00467) | Thermochaetoides thermophila DSM 1495 | |
| 45 | TA (LZ) | 60S ribosomal protein L27 | polymer | 135 | 15803.7 | 1 | UniProt (G0RZE9) Pfam (PF01777) | Thermochaetoides thermophila DSM 1495 | |
| 46 | UA (La) | 60S ribosomal protein L28-like protein | polymer | 149 | 16848.5 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 47 | VA (Lc) | 60S ribosomal protein l30-like protein | polymer | 108 | 11602.6 | 1 | UniProt (G0SEI0) Pfam (PF01248) | Thermochaetoides thermophila DSM 1495 | |
| 48 | WA (Ld) | Putative 60S ribosomal protein | polymer | 120 | 13872.2 | 1 | UniProt (G0SD68) Pfam (PF01198) | Thermochaetoides thermophila DSM 1495 | |
| 49 | XA (Le) | 60S ribosomal protein L32-like protein | polymer | 131 | 15096.0 | 1 | UniProt (G0S6V4) Pfam (PF01655) | Thermochaetoides thermophila DSM 1495 | |
| 50 | YA (Lf) | 60S ribosomal protein l33-like protein | polymer | 109 | 12330.3 | 1 | UniProt (G0SCL3) Pfam (PF01247) | Thermochaetoides thermophila DSM 1495 | |
| 51 | ZA (Lg) | Ribosomal protein l34-like protein | polymer | 119 | 13493.0 | 1 | UniProt (G0SFN0) Pfam (PF01199) | Thermochaetoides thermophila DSM 1495 | |
| 52 | AB (Lh) | dolichyl-diphosphooligosaccharide--protein glycotransferase | polymer | 935 | 105169.2 | 1 | UniProt (G0S0D7) Pfam (PF00831) Pfam (PF02516) Pfam (PF21436) | Thermochaetoides thermophila DSM 1495 | |
| 53 | BB (Li) | 60S ribosomal protein L36 | polymer | 110 | 12784.1 | 1 | UniProt (G0SBN1) Pfam (PF01158) | Thermochaetoides thermophila DSM 1495 | |
| 54 | CB (Lj) | Ribosomal protein L37 | polymer | 95 | 10660.5 | 1 | UniProt (G0S101) Pfam (PF01907) | Thermochaetoides thermophila DSM 1495 | |
| 55 | DB (Lk) | 60S ribosomal protein L38-like protein | polymer | 94 | 10902.0 | 1 | UniProt (G0SG89) Pfam (PF01781) | Thermochaetoides thermophila DSM 1495 | |
| 56 | EB (Ll) | Ribosomal protein eL39 | polymer | 51 | 6297.5 | 1 | UniProt (Q2H9R2) Pfam (PF00832) | Thermochaetoides thermophila DSM 1495 | |
| 57 | FB (Lp) | 60S ribosomal protein L43-like protein | polymer | 92 | 10159.0 | 1 | UniProt (G0S6B0) Pfam (PF01780) | Thermochaetoides thermophila DSM 1495 | |
| 58 | GB (Lq) | Putative 60S ribosomal protein | polymer | 147 | 15960.5 | 1 | UniProt (G0SHJ6) Pfam (PF01778) | Thermochaetoides thermophila DSM 1495 | |
| 59 | HB, LB (CH, Cd) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 2 | Chemie (GTP) PubChem (177679032) PubChem (135400627) PubChem (135487750) PubChem (136088935) PubChem (136803486) PubChem (135398633) PubChem (135544356) PubChem (135547949) PubChem (135600366) PubChem (135749822) PubChem (136005188) PubChem (136073923) PubChem (136240914) PubChem (136664747) PubChem (136772743) PubChem (136772744) PubChem (136803487) PubChem (137286749) PubChem (164715984) PubChem (171699466) | |||
| 60 | IB, MB, NB (CH, Cd) | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) PubChem (888) | |||
| 61 | JB, KB, OB, PB, QB (CQ, Cb, Lg, Lj, Lp) | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
| 62 | RB, SB (CH, Cd) | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
Ch: 1 - 517 (UniProt: G0SC29)
| PDB | External Database | Details |
|---|---|---|
| Asp 117 | Glu 117 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 59 |
| Total formula weight | 3062683.1 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 1446.3 | |
| All* | Total formula weight | 3064129.4 |
