8PSD
SARS-CoV-2 XBB 1.0 closed conformation.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | C, A, B | Spike glycoprotein | polymer | 1204 | 133542.3 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 36 | Chemie (NAG) |
Sequence modifications
C, A, B: 1 - 1203 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Ile 19 | Thr 19 | conflict |
| - | Leu 24 | deletion |
| - | Pro 25 | deletion |
| - | Pro 26 | deletion |
| Ser 24 | Ala 27 | conflict |
| Ala 80 | Val 83 | conflict |
| Asp 139 | Gly 142 | conflict |
| - | Tyr 144 | deletion |
| Gln 142 | His 146 | conflict |
| Glu 179 | Gln 183 | conflict |
| Glu 209 | Val 213 | conflict |
| Val 248 | Gly 252 | conflict |
| His 335 | Gly 339 | conflict |
| Thr 342 | Arg 346 | conflict |
| Ile 364 | Leu 368 | conflict |
| Phe 367 | Ser 371 | conflict |
| Pro 369 | Ser 373 | conflict |
| Phe 371 | Ser 375 | conflict |
| Ala 372 | Thr 376 | conflict |
| Asn 401 | Asp 405 | conflict |
| Ser 404 | Arg 408 | conflict |
| Asn 413 | Lys 417 | conflict |
| Lys 436 | Asn 440 | conflict |
| Pro 441 | Val 445 | conflict |
| Ser 442 | Gly 446 | conflict |
| Lys 456 | Asn 460 | conflict |
| Asn 473 | Ser 477 | conflict |
| Lys 474 | Thr 478 | conflict |
| Ala 480 | Glu 484 | conflict |
| Ser 482 | Phe 486 | conflict |
| Ser 486 | Phe 490 | conflict |
| Arg 494 | Gln 498 | conflict |
| Tyr 497 | Asn 501 | conflict |
| His 501 | Tyr 505 | conflict |
| Gly 610 | Asp 614 | conflict |
| Tyr 651 | His 655 | conflict |
| Lys 675 | Asn 679 | conflict |
| His 677 | Pro 681 | conflict |
| Gly 678 | Arg 682 | conflict |
| Ser 679 | Arg 683 | conflict |
| Ser 681 | Arg 685 | conflict |
| Lys 760 | Asn 764 | conflict |
| Tyr 792 | Asp 796 | conflict |
| His 950 | Gln 954 | conflict |
| Lys 965 | Asn 969 | conflict |
| Pro 982 | Lys 986 | conflict |
| Pro 983 | Val 987 | conflict |
| Gln 1204 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 400626.9 | |
| Non-Polymers* | Number of molecules | 36 |
| Total formula weight | 7963.5 | |
| All* | Total formula weight | 408590.4 |
