8PQ2
XBB 1.0 RBD bound to P4J15 (Local)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | H | P4J15 Fragment Antigen-Binding Heavy Chain | polymer | 121 | 13375.9 | 1 | Homo sapiens | ||
2 | L | P4J15 Fragment Antigen-Binding Light Chain | polymer | 107 | 11762.0 | 1 | Homo sapiens | ||
3 | C | Spike protein S2' | polymer | 195 | 21900.7 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
4 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) |
Sequence modifications
C: 333 - 527 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
His 339 | Gly 339 | conflict |
Thr 346 | Arg 346 | conflict |
Ile 368 | Leu 368 | conflict |
Phe 371 | Ser 371 | conflict |
Pro 373 | Ser 373 | conflict |
Phe 375 | Ser 375 | conflict |
Ala 376 | Thr 376 | conflict |
Asn 405 | Asp 405 | conflict |
Ser 408 | Arg 408 | conflict |
Asn 417 | Lys 417 | conflict |
Lys 440 | Asn 440 | conflict |
Pro 445 | Val 445 | conflict |
Ser 446 | Gly 446 | conflict |
Lys 460 | Asn 460 | conflict |
Asn 477 | Ser 477 | conflict |
Lys 478 | Thr 478 | conflict |
Ala 484 | Glu 484 | conflict |
Ser 486 | Phe 486 | conflict |
Ser 490 | Phe 490 | conflict |
Arg 498 | Gln 498 | conflict |
Tyr 501 | Asn 501 | conflict |
His 505 | Tyr 505 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 47038.6 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 221.2 | |
All* | Total formula weight | 47259.8 |