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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8PKL

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1050S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coliRibosomal protein B, ribosomal protein bL36
2150S ribosomal protein L28polymer789027.61UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coliribosomal protein bL28
3250S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coliribosomal protein uL29
4350S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coliribosomal protein uL30
54Large ribosomal subunit protein bL31Apolymer707887.11UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coli50S ribosomal protein L31
6550S ribosomal protein L32polymer576463.41UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coliribosomal protein bL32
7650S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliRibosomal protein A, ribosomal protein bL35
8723S ribosomal RNApolymer2921947284.11Escherichia coli
985S ribosomal RNApolymer12038813.11Escherichia coli
10A16S ribosomal RNApolymer1535497710.21GenBank (1758835854)Escherichia coli
11BSmall ribosomal subunit protein uS2polymer24126781.71UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli30S ribosomal protein S2
12CSmall ribosomal subunit protein uS3polymer23326031.31UniProt (P0A7V3)
Pfam (PF00189)
Pfam (PF07650)
In PDB		Escherichia coli30S ribosomal protein S3
13DSmall ribosomal subunit protein uS4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli30S ribosomal protein S4
14ESmall ribosomal subunit protein uS5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli30S ribosomal protein S5
15F30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
16G30S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coliSmall ribosomal subunit protein uS7
17HSmall ribosomal subunit protein uS8polymer13014146.61UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli30S ribosomal protein S8
18ISmall ribosomal subunit protein uS9polymer13014886.31UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli30S ribosomal protein S9
19J30S ribosomal protein S10polymer10311755.61UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coliSmall ribosomal subunit protein uS10,Transcription termination/antitermination protein NusE
20KSmall ribosomal subunit protein uS11polymer12913871.01UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli30S ribosomal protein S11
21LSmall ribosomal subunit protein uS12polymer12413768.21UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli30S ribosomal protein S12
22MSmall ribosomal subunit protein uS13polymer11813128.51UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli30S ribosomal protein S13
23NSmall ribosomal subunit protein uS14polymer10111606.61UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli30S ribosomal protein S14
24O30S ribosomal protein S15polymer8910290.81UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coliSmall ribosomal subunit protein uS15
25P30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coliSmall ribosomal subunit protein bS16
26QSmall ribosomal subunit protein uS17polymer849724.51UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli30S ribosomal protein S17
27RSmall ribosomal subunit protein bS18polymer759005.51UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli30S ribosomal protein S18
28SSmall ribosomal subunit protein uS19polymer9210455.41UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli30S ribosomal protein S19
29TSmall ribosomal subunit protein bS20polymer879708.51UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli30S ribosomal protein S20
30U30S ribosomal protein S21polymer718524.01UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coliSmall ribosomal subunit protein bS21
31VmRNApolymer247738.71Escherichia coli
32WtRNA-Trp (P-site)polymer7624628.91Escherichia coli
33XtRNA-Arg (E-site)polymer7724978.11Escherichia coli
34YtRNA-Ala (A-site)polymer7624555.71GenBank (1845258627)Escherichia coli
35aLarge ribosomal subunit protein uL1polymer23424765.71UniProt (P0A7L0)
Pfam (PF00687)
In PDB		Escherichia coli50S ribosomal protein L1
36b50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliribosomal protein uL2
37c50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliribosomal protein uL3
38d50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coliribosomal protein uL4
39e50S ribosomal protein L5polymer17920333.61UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coliribosomal protein uL5
40f50S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coliribosomal protein uL6
41g50S ribosomal protein L33polymer556388.61UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coliribosomal protein bL33
42h50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliribosomal protein uL16
43i50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coliribosomal protein bL9
44jLarge ribosomal subunit protein uL10polymer16517736.61UniProt (P0A7J3)
Pfam (PF00466)
In PDB		Escherichia coli50S ribosomal protein L10,50S ribosomal protein L8
45k50S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coliribosomal protein uL11
46l50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coliribosomal protein bL34
47m50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coliribosomal protein uL13
48n50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coliribosomal protein uL14
49o50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coliribosomal protein uL15
50pNascent peptidepolymer363356.11Escherichia coli
51q50S ribosomal protein L17polymer12714393.71UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coliribosomal protein bL17
52r50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coliribosomal protein uL18
53s50S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coliribosomal protein bL19
54t50S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coliribosomal protein bL20
55u50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coliribosomal protein bL21
56v50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliribosomal protein uL22
57w50S ribosomal protein L23polymer10011222.21UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coliribosomal protein uL23
58x50S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coliribosomal protein uL24
59y50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coliribosomal protein bL25
60z50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
610, 4ZINC IONnon-polymer65.42Chemie (ZN)
6271,4-DIAMINOBUTANEnon-polymer88.22Chemie (PUT)
637SPERMIDINEnon-polymer145.21Chemie (SPD)
647, A, I, V, X...MAGNESIUM IONnon-polymer24.3287Chemie (MG)
65YALANINEnon-polymer89.11Chemie (ALA)
66waterwater18.013Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains60
Total formula weight2286426.7
Non-Polymers*Number of molecules293
Total formula weight7517.0
All*Total formula weight2293943.7
*Water molecules are not included.

221051

PDB entries from 2024-06-12

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