8PDK
X-ray structure of the Thermus thermophilus PilF-GSPIIB domain in the c-di-GMP bound state
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | c-di-GMP binding domain of the ATPase enzyme PilF | polymer | 146 | 16269.6 | 2 | UniProt (Q72H73) Pfam (PF05157) UniProt (by SIFTS) (Q5SLC9) | Thermus thermophilus HB27 | |
| 2 | C, O (A, B) | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) | non-polymer | 690.4 | 2 | Chemie (C2E) | |||
| 3 | D, E, F, P, Q... (A, B) | SULFATE ION | non-polymer | 96.1 | 7 | Chemie (SO4) | |||
| 4 | G, H, I, J, K... (A, B) | ACETATE ION | non-polymer | 59.0 | 13 | Chemie (ACT) | |||
| 5 | Y, Z (A, B) | water | water | 18.0 | 178 | Chemie (HOH) |
Sequence modifications
A, B: 159 - 302 (UniProt: Q72H73)
| PDB | External Database | Details |
|---|---|---|
| Gly 157 | - | expression tag |
| Ser 158 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 32539.1 | |
| Non-Polymers* | Number of molecules | 22 |
| Total formula weight | 2820.8 | |
| All* | Total formula weight | 35360.0 |
