8P8V
Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 50S ribosomal protein L34 | polymer | 48 | 5616.8 | 1 | UniProt (P78006) Pfam (PF00468) | Mycoplasmoides pneumoniae M129 | |
| 2 | B (1) | 50S ribosomal protein L35 | polymer | 59 | 6793.1 | 1 | UniProt (P75447) Pfam (PF01632) | Mycoplasmoides pneumoniae M129 | |
| 3 | C (2) | 50S ribosomal protein L36 | polymer | 37 | 4400.5 | 1 | UniProt (P52864) Pfam (PF00444) | Mycoplasmoides pneumoniae M129 | |
| 4 | D (3) | 23S ribosomal RNA | polymer | 2907 | 940953.5 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 5 | E (4) | 5S ribosomal RNA | polymer | 108 | 34796.7 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 6 | F (5) | 16S ribosomal RNA | polymer | 1520 | 491327.8 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 7 | G (6) | tRNA-Ala (E-site) | polymer | 76 | 24440.5 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 8 | H (7) | tRNA-Asp (P-site) | polymer | 75 | 24136.2 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 9 | I (8) | tRNA-Lys (A-site) | polymer | 76 | 24401.4 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 10 | J (9) | 50S ribosomal protein L1 | polymer | 226 | 24392.6 | 1 | UniProt (P78035) Pfam (PF00687) | Mycoplasmoides pneumoniae M129 | |
| 11 | K (A) | 30S ribosomal protein S2 | polymer | 294 | 33468.6 | 1 | UniProt (P75560) Pfam (PF00318) | Mycoplasmoides pneumoniae M129 | |
| 12 | L (B) | 30S ribosomal protein S3 | polymer | 273 | 30657.2 | 1 | UniProt (P41205) Pfam (PF07650) Pfam (PF00189) | Mycoplasmoides pneumoniae M129 | |
| 13 | M (C) | 30S ribosomal protein S4 | polymer | 205 | 23817.6 | 1 | UniProt (P46775) Pfam (PF00163) Pfam (PF01479) | Mycoplasmoides pneumoniae M129 | |
| 14 | N (D) | 30S ribosomal protein S5 | polymer | 219 | 24138.0 | 1 | UniProt (Q50301) Pfam (PF00333) Pfam (PF03719) | Mycoplasmoides pneumoniae M129 | |
| 15 | O (E) | 30S ribosomal protein S6 | polymer | 215 | 25430.5 | 1 | UniProt (P75543) Pfam (PF01250) | Mycoplasmoides pneumoniae M129 | |
| 16 | P (F) | 30S ribosomal protein S7 | polymer | 155 | 17897.0 | 1 | UniProt (P75545) Pfam (PF00177) | Mycoplasmoides pneumoniae M129 | |
| 17 | Q (G) | 30S ribosomal protein S8 | polymer | 142 | 15903.1 | 1 | UniProt (Q50304) Pfam (PF00410) | Mycoplasmoides pneumoniae M129 | |
| 18 | R (H) | 30S ribosomal protein S9 | polymer | 132 | 15149.7 | 1 | UniProt (P75179) Pfam (PF00380) | Mycoplasmoides pneumoniae M129 | |
| 19 | S (I) | 30S ribosomal protein S10 | polymer | 108 | 12226.6 | 1 | UniProt (P75581) Pfam (PF00338) | Mycoplasmoides pneumoniae M129 | |
| 20 | T (J) | 30S ribosomal protein S11 | polymer | 121 | 12709.9 | 1 | UniProt (Q50296) Pfam (PF00411) | Mycoplasmoides pneumoniae M129 | |
| 21 | U (K) | 30S ribosomal protein S12 | polymer | 139 | 15666.6 | 1 | UniProt (P75546) Pfam (PF00164) | Mycoplasmoides pneumoniae M129 | |
| 22 | V (L) | 30S ribosomal protein S13 | polymer | 124 | 14209.6 | 1 | UniProt (Q50297) Pfam (PF00416) | Mycoplasmoides pneumoniae M129 | |
| 23 | W (M) | 30S ribosomal protein S14 type Z | polymer | 61 | 6901.4 | 1 | UniProt (Q50305) Pfam (PF00253) | Mycoplasmoides pneumoniae M129 | |
| 24 | X (N) | 30S ribosomal protein S15 | polymer | 86 | 9921.7 | 1 | UniProt (P75173) Pfam (PF00312) | Mycoplasmoides pneumoniae M129 | |
| 25 | Y (O) | 30S ribosomal protein S16 | polymer | 94 | 10806.9 | 1 | UniProt (A0A0H3DLS7) Pfam (PF00886) UniProt (by SIFTS) (P75131) | Mycoplasmoides pneumoniae M129 | |
| 26 | Z (P) | 30S ribosomal protein S17 | polymer | 85 | 9859.6 | 1 | UniProt (Q50309) Pfam (PF00366) | Mycoplasmoides pneumoniae M129 | |
| 27 | AA (Q) | 30S ribosomal protein S18 | polymer | 104 | 12411.5 | 1 | UniProt (P75541) Pfam (PF01084) | Mycoplasmoides pneumoniae M129 | |
| 28 | BA (R) | 30S ribosomal protein S19 | polymer | 87 | 10057.6 | 1 | UniProt (P75576) Pfam (PF00203) | Mycoplasmoides pneumoniae M129 | |
| 29 | CA (S) | 30S ribosomal protein S20 | polymer | 87 | 9993.6 | 1 | UniProt (P75237) Pfam (PF01649) | Mycoplasmoides pneumoniae M129 | |
| 30 | DA (T) | 30S ribosomal protein S21 | polymer | 60 | 7539.2 | 1 | UniProt (P57079) | Mycoplasmoides pneumoniae M129 | |
| 31 | EA (X) | Trigger factor | polymer | 444 | 51427.0 | 1 | UniProt (P75454) Pfam (PF05697) Pfam (PF00254) Pfam (PF05698) | Mycoplasmoides pneumoniae M129 | TF,PPIase |
| 32 | FA (Y) | mRNA | polymer | 40 | 12936.9 | 1 | Mycoplasmoides pneumoniae M129 | ||
| 33 | GA (Z) | Nascent chain | polymer | 36 | 3127.8 | 1 | Mycoplasmoides pneumoniae M129 | ||
| 34 | HA (a) | 50S ribosomal protein L2 | polymer | 287 | 31966.9 | 1 | UniProt (P75577) Pfam (PF00181) Pfam (PF03947) | Mycoplasmoides pneumoniae M129 | |
| 35 | IA (b) | 50S ribosomal protein L3 | polymer | 287 | 31298.2 | 1 | UniProt (P75580) Pfam (PF00297) | Mycoplasmoides pneumoniae M129 | |
| 36 | JA (c) | 50S ribosomal protein L4 | polymer | 212 | 23632.6 | 1 | UniProt (P75579) Pfam (PF00573) | Mycoplasmoides pneumoniae M129 | |
| 37 | KA (d) | 50S ribosomal protein L5 | polymer | 180 | 20270.8 | 1 | UniProt (Q50306) Pfam (PF00281) Pfam (PF00673) | Mycoplasmoides pneumoniae M129 | |
| 38 | LA (e) | 50S ribosomal protein L6 | polymer | 184 | 20624.1 | 1 | UniProt (Q50303) Pfam (PF00347) | Mycoplasmoides pneumoniae M129 | |
| 39 | MA (f) | 50S ribosomal protein L9 | polymer | 149 | 17185.0 | 1 | UniProt (P75540) Pfam (PF01281) Pfam (PF03948) | Mycoplasmoides pneumoniae M129 | |
| 40 | NA (g) | 50S ribosomal protein L10 | polymer | 161 | 17645.7 | 1 | UniProt (P75240) Pfam (PF00466) | Mycoplasmoides pneumoniae M129 | |
| 41 | OA (h) | 50S ribosomal protein L11 | polymer | 137 | 14803.6 | 1 | UniProt (P75550) Pfam (PF03946) Pfam (PF00298) | Mycoplasmoides pneumoniae M129 | |
| 42 | PA (i) | 50S ribosomal protein L13 | polymer | 146 | 16821.5 | 1 | UniProt (P75178) Pfam (PF00572) | Mycoplasmoides pneumoniae M129 | |
| 43 | QA (j) | 50S ribosomal protein L14 | polymer | 122 | 13478.9 | 1 | UniProt (Q50308) Pfam (PF00238) | Mycoplasmoides pneumoniae M129 | |
| 44 | RA (k) | 50S ribosomal protein L15 | polymer | 151 | 16768.8 | 1 | UniProt (Q50300) Pfam (PF00828) | Mycoplasmoides pneumoniae M129 | |
| 45 | SA (l) | 50S ribosomal protein L16 | polymer | 139 | 15646.5 | 1 | UniProt (P41204) Pfam (PF00252) | Mycoplasmoides pneumoniae M129 | |
| 46 | TA (m) | 50S ribosomal protein L17 | polymer | 124 | 14270.7 | 1 | UniProt (Q59547) Pfam (PF01196) | Mycoplasmoides pneumoniae M129 | |
| 47 | UA (n) | 50S ribosomal protein L18 | polymer | 116 | 13073.3 | 1 | UniProt (Q50302) Pfam (PF00861) | Mycoplasmoides pneumoniae M129 | |
| 48 | VA (o) | 50S ribosomal protein L19 | polymer | 119 | 13870.3 | 1 | UniProt (P75133) Pfam (PF01245) | Mycoplasmoides pneumoniae M129 | |
| 49 | WA (p) | 50S ribosomal protein L20 | polymer | 127 | 14742.4 | 1 | UniProt (P78023) Pfam (PF00453) | Mycoplasmoides pneumoniae M129 | |
| 50 | XA (q) | 50S ribosomal protein L21 | polymer | 100 | 11664.8 | 1 | UniProt (P78026) Pfam (PF00829) | Mycoplasmoides pneumoniae M129 | |
| 51 | YA (r) | 50S ribosomal protein L22 | polymer | 159 | 17355.4 | 1 | UniProt (P75575) Pfam (PF00237) | Mycoplasmoides pneumoniae M129 | |
| 52 | ZA (s) | 50S ribosomal protein L23 | polymer | 237 | 25892.7 | 1 | UniProt (P75578) Pfam (PF00276) | Mycoplasmoides pneumoniae M129 | |
| 53 | AB (t) | 50S ribosomal protein L24 | polymer | 111 | 12461.9 | 1 | UniProt (Q50307) Pfam (PF00467) Pfam (PF17136) | Mycoplasmoides pneumoniae M129 | |
| 54 | BB (u) | 50S ribosomal protein L27 | polymer | 104 | 11527.3 | 1 | UniProt (P75458) Pfam (PF01016) | Mycoplasmoides pneumoniae M129 | |
| 55 | CB (v) | 50S ribosomal protein L28 | polymer | 65 | 7549.9 | 1 | UniProt (P75171) Pfam (PF00830) | Mycoplasmoides pneumoniae M129 | |
| 56 | DB (w) | 50S ribosomal protein L29 | polymer | 111 | 13003.3 | 1 | UniProt (Q50310) Pfam (PF00831) | Mycoplasmoides pneumoniae M129 | |
| 57 | EB (x) | 50S ribosomal protein L31 | polymer | 97 | 10980.7 | 1 | UniProt (P78020) Pfam (PF01197) | Mycoplasmoides pneumoniae M129 | |
| 58 | FB (y) | 50S ribosomal protein L32 | polymer | 57 | 6641.9 | 1 | UniProt (P75238) Pfam (PF01783) | Mycoplasmoides pneumoniae M129 | |
| 59 | GB (z) | 50S ribosomal protein L33 1 | polymer | 53 | 6298.6 | 1 | UniProt (P78015) Pfam (PF00471) | Mycoplasmoides pneumoniae M129 | |
| 60 | BN, DN, HB, VN, YN... (M, Q, 2, x, y...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
| 61 | IB (3) | CHLORAMPHENICOL | non-polymer | 323.1 | 1 | Chemie (CLM) | |||
| 62 | JB (3) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) | |||
| 63 | AC, AD, AE, AF, AG... (3, 5, L, P, Y...) | MAGNESIUM ION | non-polymer | 24.3 | 322 | Chemie (MG) | |||
| 64 | XM (8) | LYSINE | non-polymer | 147.2 | 1 | Chemie (LYS) |
Sequence modifications
5: 1 - 1520 (GenBank: 26117688)
7: 1 - 75 (GenBank: 26117688)
| PDB | External Database | Details |
|---|---|---|
| A 1003 | G 119315 | conflict |
| PDB | External Database | Details |
|---|---|---|
| G 17 | - | insertion |
| C 55 | U 358889 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 59 |
| Total formula weight | 2386992.8 | |
| Non-Polymers* | Number of molecules | 331 |
| Total formula weight | 8728.1 | |
| All* | Total formula weight | 2395720.9 |
