8P8B
Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 50S ribosomal protein L34 | polymer | 48 | 5616.8 | 1 | UniProt (P78006) Pfam (PF00468) | Mycoplasmoides pneumoniae M129 | |
| 2 | B (1) | 50S ribosomal protein L35 | polymer | 59 | 6793.1 | 1 | UniProt (P75447) Pfam (PF01632) | Mycoplasmoides pneumoniae M129 | |
| 3 | C (2) | 50S ribosomal protein L36 | polymer | 37 | 4400.5 | 1 | UniProt (P52864) Pfam (PF00444) | Mycoplasmoides pneumoniae M129 | |
| 4 | D (3) | 23S ribosomal RNA | polymer | 2907 | 940953.5 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 5 | E (4) | 5S ribosomal RNA | polymer | 108 | 34796.7 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 6 | F (5) | 16S ribosomal RNA | polymer | 1520 | 491327.8 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 7 | G (6) | tRNA-Ala (E-site) | polymer | 76 | 24440.5 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 8 | H (7) | tRNA-Asp (P-site) | polymer | 75 | 24136.2 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 9 | I (8) | tRNA-Lys (A-site) | polymer | 76 | 24401.4 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 10 | J (X) | Trigger factor | polymer | 444 | 51427.0 | 1 | UniProt (P75454) Pfam (PF05697) Pfam (PF00254) Pfam (PF05698) | Mycoplasmoides pneumoniae M129 | TF,PPIase |
| 11 | K (Y) | mRNA | polymer | 9 | 2894.8 | 1 | Mycoplasmoides pneumoniae M129 | ||
| 12 | L (Z) | nascent peptide | polymer | 36 | 3127.8 | 1 | Mycoplasmoides pneumoniae M129 | ||
| 13 | M (a) | 50S ribosomal protein L2 | polymer | 287 | 31966.9 | 1 | UniProt (P75577) Pfam (PF00181) Pfam (PF03947) | Mycoplasmoides pneumoniae M129 | |
| 14 | N (b) | 50S ribosomal protein L3 | polymer | 287 | 31298.2 | 1 | UniProt (P75580) Pfam (PF00297) | Mycoplasmoides pneumoniae M129 | |
| 15 | O (c) | 50S ribosomal protein L4 | polymer | 212 | 23632.6 | 1 | UniProt (P75579) Pfam (PF00573) | Mycoplasmoides pneumoniae M129 | |
| 16 | P (d) | 50S ribosomal protein L5 | polymer | 180 | 20270.8 | 1 | UniProt (Q50306) Pfam (PF00281) Pfam (PF00673) | Mycoplasmoides pneumoniae M129 | |
| 17 | Q (e) | 50S ribosomal protein L6 | polymer | 184 | 20624.1 | 1 | UniProt (Q50303) Pfam (PF00347) | Mycoplasmoides pneumoniae M129 | |
| 18 | R (f) | 50S ribosomal protein L9 | polymer | 149 | 17185.0 | 1 | UniProt (P75540) Pfam (PF01281) Pfam (PF03948) | Mycoplasmoides pneumoniae M129 | |
| 19 | S (g) | 50S ribosomal protein L10 | polymer | 161 | 17645.7 | 1 | UniProt (P75240) Pfam (PF00466) | Mycoplasmoides pneumoniae M129 | |
| 20 | T (h) | 50S ribosomal protein L11 | polymer | 137 | 14803.6 | 1 | UniProt (P75550) Pfam (PF03946) Pfam (PF00298) | Mycoplasmoides pneumoniae M129 | |
| 21 | U (i) | 50S ribosomal protein L13 | polymer | 146 | 16821.5 | 1 | UniProt (P75178) Pfam (PF00572) | Mycoplasmoides pneumoniae M129 | |
| 22 | V (j) | 50S ribosomal protein L14 | polymer | 122 | 13478.9 | 1 | UniProt (Q50308) Pfam (PF00238) | Mycoplasmoides pneumoniae M129 | |
| 23 | W (k) | 50S ribosomal protein L15 | polymer | 151 | 16768.8 | 1 | UniProt (Q50300) Pfam (PF00828) | Mycoplasmoides pneumoniae M129 | |
| 24 | X (l) | 50S ribosomal protein L16 | polymer | 139 | 15646.5 | 1 | UniProt (P41204) Pfam (PF00252) | Mycoplasmoides pneumoniae M129 | |
| 25 | Y (m) | 50S ribosomal protein L17 | polymer | 124 | 14270.7 | 1 | UniProt (Q59547) Pfam (PF01196) | Mycoplasmoides pneumoniae M129 | |
| 26 | Z (n) | 50S ribosomal protein L18 | polymer | 116 | 13073.3 | 1 | UniProt (Q50302) Pfam (PF00861) | Mycoplasmoides pneumoniae M129 | |
| 27 | AA (o) | 50S ribosomal protein L19 | polymer | 119 | 13870.3 | 1 | UniProt (P75133) Pfam (PF01245) | Mycoplasmoides pneumoniae M129 | |
| 28 | BA (p) | 50S ribosomal protein L20 | polymer | 127 | 14742.4 | 1 | UniProt (P78023) Pfam (PF00453) | Mycoplasmoides pneumoniae M129 | |
| 29 | CA (q) | 50S ribosomal protein L21 | polymer | 100 | 11664.8 | 1 | UniProt (P78026) Pfam (PF00829) | Mycoplasmoides pneumoniae M129 | |
| 30 | DA (r) | 50S ribosomal protein L22 | polymer | 159 | 17355.4 | 1 | UniProt (P75575) Pfam (PF00237) | Mycoplasmoides pneumoniae M129 | |
| 31 | EA (s) | 50S ribosomal protein L23 | polymer | 237 | 25892.7 | 1 | UniProt (P75578) Pfam (PF00276) | Mycoplasmoides pneumoniae M129 | |
| 32 | FA (t) | 50S ribosomal protein L24 | polymer | 111 | 12461.9 | 1 | UniProt (Q50307) Pfam (PF00467) Pfam (PF17136) | Mycoplasmoides pneumoniae M129 | |
| 33 | GA (u) | 50S ribosomal protein L27 | polymer | 104 | 11527.3 | 1 | UniProt (P75458) Pfam (PF01016) | Mycoplasmoides pneumoniae M129 | |
| 34 | HA (v) | 50S ribosomal protein L28 | polymer | 65 | 7549.9 | 1 | UniProt (P75171) Pfam (PF00830) | Mycoplasmoides pneumoniae M129 | |
| 35 | IA (w) | 50S ribosomal protein L29 | polymer | 111 | 13003.3 | 1 | UniProt (Q50310) Pfam (PF00831) | Mycoplasmoides pneumoniae M129 | |
| 36 | JA (x) | 50S ribosomal protein L31 | polymer | 97 | 10980.7 | 1 | UniProt (P78020) Pfam (PF01197) | Mycoplasmoides pneumoniae M129 | |
| 37 | KA (y) | 50S ribosomal protein L32 | polymer | 57 | 6641.9 | 1 | UniProt (P75238) Pfam (PF01783) | Mycoplasmoides pneumoniae M129 | |
| 38 | LA (z) | 50S ribosomal protein L33 1 | polymer | 53 | 6298.6 | 1 | UniProt (P78015) Pfam (PF00471) | Mycoplasmoides pneumoniae M129 | |
| 39 | MA, NK, QK, RK (2, x, y, z) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 40 | NA (3) | CHLORAMPHENICOL | non-polymer | 323.1 | 1 | Chemie (CLM) | |||
| 41 | OA (3) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) | |||
| 42 | AB, AC, AD, AE, AF... (3, 4, 6, 7, 8...) | MAGNESIUM ION | non-polymer | 24.3 | 229 | Chemie (MG) | |||
| 43 | AJ, BJ, CJ, DJ, EJ... (3) | 1,4-DIAMINOBUTANE | non-polymer | 88.2 | 7 | Chemie (PUT) | |||
| 44 | BK, FJ, LK, TJ (3, b) | SPERMINE | non-polymer | 202.3 | 4 | Chemie (SPM) | |||
| 45 | AK, CK, GJ, HJ, IJ... (3) | SPERMIDINE | non-polymer | 145.2 | 16 | Chemie (SPD) | |||
| 46 | VJ, WJ, ZJ (3) | PENTANE-1,5-DIAMINE | non-polymer | 102.2 | 3 | Chemie (N2P) | |||
| 47 | IK (8) | LYSINE | non-polymer | 147.2 | 1 | Chemie (LYS) |
Sequence modifications
5: 1 - 1520 (GenBank: 26117688)
7: 1 - 75 (GenBank: 26117688)
| PDB | External Database | Details |
|---|---|---|
| A 1003 | G 119315 | conflict |
| PDB | External Database | Details |
|---|---|---|
| G 17 | - | insertion |
| C 55 | U 358889 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 38 |
| Total formula weight | 2033792.1 | |
| Non-Polymers* | Number of molecules | 266 |
| Total formula weight | 10393.8 | |
| All* | Total formula weight | 2044185.9 |
