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8P85

80S yeast ribosome in complex with Fluorolissoclimide

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, UD
(A, sR)
16S ribosomal RNApolymer1800579761.92GenBank (874346701)Saccharomyces cerevisiae (brewer's yeast)
2B, WD
(B, s0)
40S ribosomal protein S0-Apolymer25228051.32UniProt (P32905)
Pfam (PF00318)
Saccharomyces cerevisiae (brewer's yeast)Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
3C, XD
(C, s1)
40S ribosomal protein S1-Apolymer25528798.52UniProt (P33442)
Pfam (PF01015)
Saccharomyces cerevisiae (brewer's yeast)RP10A,Small ribosomal subunit protein eS1-A
4D, YD
(D, s2)
40S ribosomal protein S2polymer25427490.82UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
Saccharomyces cerevisiae (brewer's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
5E, ZD
(E, s3)
Small ribosomal subunit protein uS3polymer24026542.82UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S3,RP13,YS3
6AE, F
(F, s4)
40S ribosomal protein S4-Apolymer26129469.32UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Saccharomyces cerevisiae (brewer's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
7BE, G
(G, s5)
40S ribosomal protein S5polymer22525072.62UniProt (P26783)
Pfam (PF00177)
Saccharomyces cerevisiae (brewer's yeast)RP14,S2,Small ribosomal subunit protein uS7,YS8
8CE, H
(H, s6)
40S ribosomal protein S6-Apolymer23627054.52UniProt (P0CX37)
Pfam (PF01092)
Saccharomyces cerevisiae (brewer's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
9DE, I
(I, s7)
40S ribosomal protein S7-Apolymer19021658.22UniProt (P26786)
Pfam (PF01251)
Saccharomyces cerevisiae (brewer's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
10EE, J
(J, s8)
40S ribosomal protein S8-Apolymer20022537.82UniProt (P0CX39)
Pfam (PF01201)
Saccharomyces cerevisiae (brewer's yeast)RP19,S14,Small ribosomal subunit protein eS8-A,YS9
11FE, K
(K, s9)
40S ribosomal protein S9-Apolymer19722487.92UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
Saccharomyces cerevisiae (brewer's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
12GE, L
(L, c0)
Small ribosomal subunit protein eS10A,Small ribosomal subunit protein eS10A,40S ribosomal protein S10-Apolymer10512757.42UniProt (Q08745)
Pfam (PF03501)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S10-A
13HE, M
(M, c1)
40S ribosomal protein S11-Apolymer15617785.92UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
Saccharomyces cerevisiae (brewer's yeast)RP41,S18,Small ribosomal subunit protein uS17-A,YS12
14IE, N
(O, c3)
40S ribosomal protein S13polymer15117059.92UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
Saccharomyces cerevisiae (brewer's yeast)S27a,Small ribosomal subunit protein uS15,YS15
15JE, O
(P, c4)
40S ribosomal protein S14-Bpolymer13814675.82UniProt (P39516)
Pfam (PF00411)
Saccharomyces cerevisiae (brewer's yeast)RP59B,Small ribosomal subunit protein uS11-B
16KE, P
(Q, c5)
40S ribosomal protein S15polymer14216031.92UniProt (Q01855)
Pfam (PF00203)
Saccharomyces cerevisiae (brewer's yeast)RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
17LE, Q
(R, c6)
40S ribosomal protein S16-Apolymer14315877.52UniProt (P0CX51)
Pfam (PF00380)
Saccharomyces cerevisiae (brewer's yeast)RP61R,Small ribosomal subunit protein uS9-A
18ME, R
(S, c7)
40S ribosomal protein S17-Apolymer13615820.42UniProt (P02407)
Pfam (PF00833)
Saccharomyces cerevisiae (brewer's yeast)RP51A,Small ribosomal subunit protein eS17-A
19NE, S
(T, c8)
40S ribosomal protein S18-Apolymer14617071.62UniProt (P0CX55)
Pfam (PF00416)
Saccharomyces cerevisiae (brewer's yeast)Small ribosomal subunit protein uS13-A
20OE, T
(U, c9)
40S ribosomal protein S19-Apolymer14415942.12UniProt (P07280)
Pfam (PF01090)
Saccharomyces cerevisiae (brewer's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
21PE, U
(V, d0)
Small ribosomal subunit protein uS10polymer12113929.02UniProt (P38701)
Pfam (PF00338)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S20
22QE, V
(W, d1)
40S ribosomal protein S21-Apolymer879758.82UniProt (P0C0V8)
Pfam (PF01249)
Saccharomyces cerevisiae (brewer's yeast)S26,Small ribosomal subunit protein eS21-A,YS25
23RE, W
(X, d2)
40S ribosomal protein S22-Apolymer13014650.12UniProt (P0C0W1)
Pfam (PF00410)
Saccharomyces cerevisiae (brewer's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
24SE, X
(Y, d3)
40S ribosomal protein S23-Apolymer14516073.92UniProt (P0CX29)
Pfam (PF00164)
Saccharomyces cerevisiae (brewer's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
25TE, Y
(Z, d4)
40S ribosomal protein S24-Apolymer13515362.82UniProt (P0CX31)
Pfam (PF01282)
Saccharomyces cerevisiae (brewer's yeast)RP50,Small ribosomal subunit protein eS24-A
26CA, Z
(AA, DB)
60S ribosomal protein L27-Apolymer13615568.42UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL27-A
27AA, MB
(DA, 9)
60S ribosomal protein L26-Apolymer12714265.82UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiae (brewer's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
28BA, EA
(AB, DC)
60S ribosomal protein L28polymer14916761.72UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae (brewer's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
29DA, HA
(AC, DD)
60S ribosomal protein L29polymer596691.92UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL29,YL43
30FA, KA
(AD, DE)
60S ribosomal protein L30polymer10511430.42UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae (brewer's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
31GA, PA
(CD, j)
60S ribosomal protein L2-Apolymer25427463.62UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae (brewer's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
32IA, XC
(AE, DF)
60S ribosomal protein L31-Apolymer11312980.22UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae (brewer's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
33JA, QA
(CE, k)
60S ribosomal protein L3polymer38743850.82UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
34LA, YC
(AF, DG)
60S ribosomal protein L32polymer13014809.42UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL32
35MA, ZB
(1, AR)
25S ribosomal RNApolymer33961097493.92GenBank (834774822)Saccharomyces cerevisiae (brewer's yeast)
36AC, NA
(3, AS)
5S ribosomal RNApolymer12138951.12GenBank (1329886537)Saccharomyces cerevisiae (brewer's yeast)
37BC, OA
(4, AT)
5.8S ribosomal RNApolymer15850682.92GenBank (1331532632)Saccharomyces cerevisiae (brewer's yeast)
38CC, RA
(l, CF)
60S ribosomal protein L4-Apolymer36239159.12UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae (brewer's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
39DC, SA
(m, CG)
60S ribosomal protein L5polymer29733764.82UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
Saccharomyces cerevisiae (brewer's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
40EC, TA
(n, CH)
60S ribosomal protein L6-Apolymer17620000.62UniProt (Q02326)
Pfam (PF01159)
Saccharomyces cerevisiae (brewer's yeast)L17,Large ribosomal subunit protein eL6-A,RP18,YL16
41FC, UA
(o, CI)
60S ribosomal protein L7-Apolymer24427686.32UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
Saccharomyces cerevisiae (brewer's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
42GC, VA
(p, CJ)
60S ribosomal protein L8-Apolymer25628175.82UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae (brewer's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
43HC, WA
(q, CK)
60S ribosomal protein L9-Apolymer19121605.12UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae (brewer's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
44IC, XA
(r, CL)
60S ribosomal protein L10polymer22125410.52UniProt (P41805)
Pfam (PF00252)
Saccharomyces cerevisiae (brewer's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
45JC, YA
(s, CM)
Large ribosomal subunit protein uL5Bpolymer17419785.72UniProt (Q3E757)
Pfam (PF00281)
Pfam (PF00673)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L11-B,L16,RP39,YL22
46KC, ZA
(t, CN)
60S ribosomal protein L13-Apolymer19922604.22UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL13-A
47AB, LC
(u, CO)
60S ribosomal protein L14-Apolymer13815195.12UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL14-A
48BB, MC
(v, CP)
60S ribosomal protein L15-Apolymer20424482.42UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae (brewer's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
49CB, NC
(w, CQ)
60S ribosomal protein L16-Apolymer19922247.22UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae (brewer's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
50DB, OC
(x, CR)
60S ribosomal protein L17-Apolymer18420589.52UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae (brewer's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
51EB, PC
(y, CS)
60S ribosomal protein L18-Apolymer18620609.32UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL18-A,RP28
52FB, QC
(z, CT)
60S ribosomal protein L19-Apolymer18921762.32UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae (brewer's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
53GB, RC
(0, CU)
60S ribosomal protein L20-Apolymer17220478.92UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae (brewer's yeast)L18a,Large ribosomal subunit protein eL20-A
54HB, SC
(2, CV)
60S ribosomal protein L21-Apolymer16018279.32UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL21-A
55IB, TC
(5, CW)
60S ribosomal protein L22-Apolymer12113711.42UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae (brewer's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
56JB, UC
(6, CX)
60S ribosomal protein L23-Apolymer13714494.02UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae (brewer's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
57KB, VC
(7, CY)
60S ribosomal protein L24-Apolymer15517661.72UniProt (P04449)
Pfam (PF01246)
Saccharomyces cerevisiae (brewer's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
58LB, WC
(8, CZ)
60S ribosomal protein L25polymer14215787.62UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
59NB, ZC
(AG, DH)
60S ribosomal protein L33-Apolymer10712177.12UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae (brewer's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
60AD, OB
(AH, DI)
60S ribosomal protein L34-Apolymer12113673.22UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL34-A
61BD, PB
(AI, DJ)
60S ribosomal protein L35-Apolymer12013942.62UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein uL29-A
62CD, QB
(AJ, DK)
60S ribosomal protein L36-Apolymer10011151.32UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae (brewer's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
63DD, RB
(AK, DL)
60S ribosomal protein L37-Apolymer889877.42UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae (brewer's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
64ED, SB
(AL, DM)
60S ribosomal protein L38polymer788845.62UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL38
65FD, TB
(AM, DN)
60S ribosomal protein L39polymer516358.62UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae (brewer's yeast)L46,Large ribosomal subunit protein eL39,YL40
66GD, UB
(AN, DO)
Ubiquitin-60S ribosomal protein L40polymer12814583.12UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)
Saccharomyces cerevisiae (brewer's yeast)
67HD, VB
(AO, DP)
Large ribosomal subunit protein eL41Bpolymer253354.22UniProt (P0CX87)
Pfam (PF05162)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L41-B,L47,YL41
68ID, WB
(AP, DQ)
60S ribosomal protein L42-Apolymer10612246.72UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiae (brewer's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
69JD, XB
(AQ, DR)
60S ribosomal protein L43-Apolymer9210113.02UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae (brewer's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
70LD, YB
(i, sM)
Suppressor protein STM1polymer27330048.02UniProt (P39015)
Pfam (PF09598)
Saccharomyces cerevisiae (brewer's yeast)3BP1,GU4 nucleic-binding protein 2,G4p2 protein,POP2 multicopy suppressor protein 4,Ribosomal subunits association factor,AF,TOM1 suppressor protein 1,Triplex-binding protein 1
71KD
(p0)
60S acidic ribosomal protein P0polymer31233749.11UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
Saccharomyces cerevisiae (brewer's yeast)A0,L10e,Large ribosomal subunit protein uL10
72MD, UE
(a, d5)
40S ribosomal protein S25-Apolymer10812067.32UniProt (Q3E792)
Pfam (PF03297)
Saccharomyces cerevisiae (brewer's yeast)RP45,S31,Small ribosomal subunit protein eS25-A,YS23
73ND, VE
(b, d6)
Small ribosomal subunit protein eS26Bpolymer11913480.92UniProt (P39939)
Pfam (PF01283)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S26-B
74OD, WE
(c, d7)
40S ribosomal protein S27-Apolymer828893.42UniProt (P35997)
Pfam (PF01667)
Saccharomyces cerevisiae (brewer's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
75PD, XE
(d, d8)
40S ribosomal protein S28-Apolymer677605.82UniProt (Q3E7X9)
Pfam (PF01200)
Saccharomyces cerevisiae (brewer's yeast)S33,Small ribosomal subunit protein eS28-A,YS27
76QD, YE
(e, d9)
Small ribosomal subunit protein uS14Apolymer566675.72UniProt (P41057)
Pfam (PF00253)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S29-A,S36,YS29
77RD, ZE
(f, e0)
40S ribosomal protein S30-Apolymer637137.52UniProt (P0CX33)
Pfam (PF04758)
Saccharomyces cerevisiae (brewer's yeast)Small ribosomal subunit protein eS30-A
78AF, SD
(g, e1)
Ubiquitinpolymer15217254.22UniProt (P05759)
Pfam (PF01599)
Pfam (PF00240)
Saccharomyces cerevisiae (brewer's yeast)
79TD, VD
(h, Rb)
Guanine nucleotide-binding protein subunit beta-like proteinpolymer31934841.22UniProt (P38011)
Pfam (PF00400)
Saccharomyces cerevisiae (brewer's yeast)Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
80AAB, ABB, ACB, ADB, AEB...
(AR, A, AS, AT, DQ...)
osmium (III) hexamminenon-polymer286.41003Chemie (OHX)
81AAA, AAC, ABA, ABC, ACA...
(1, AR, A, CF, CR...)
MAGNESIUM IONnon-polymer24.31502Chemie (MG)
82AP, BP, DGC, KJC
(A, AR, CK)
POTASSIUM IONnon-polymer39.14Chemie (K)
83QEC, QRA
(AR, 1)
SPERMIDINEnon-polymer145.22Chemie (SPD)
84BVA, TGC
(1, AR)
fluorolissoclimidenon-polymer367.52Chemie (VDU)
85DLC, ILC, IYC, KLC, KYC...
(DR, b, d6, c, d7...)
ZINC IONnon-polymer65.417Chemie (ZN)
86BXC, CXC, KXC, LXC, MXC
(s3, c0)
(2~{S})-2-azanylpropanalnon-polymer73.15Chemie (5XU)
87AZC, BZC, OYC, PYC, QYC...
(DG, sR, A, F, CD...)
waterwater18.0231Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains157
Total formula weight6274729.8
Non-Polymers*Number of molecules2535
Total formula weight326389.4
All*Total formula weight6601119.2
*Water molecules are not included.

246333

PDB entries from 2025-12-17

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