8P6P
Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cells
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (3) | 23S ribosomal RNA | polymer | 2907 | 940911.5 | 1 | Mycoplasmoides pneumoniae M129 | ||
| 2 | B (5) | 16S ribosomal RNA | polymer | 1520 | 491326.8 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 3 | C (7) | tRNA-Asp (P-site) | polymer | 75 | 24136.2 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 4 | D (8) | tRNA-Lys (A-site) | polymer | 76 | 24401.4 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 5 | E (A) | 30S ribosomal protein S2 | polymer | 294 | 33468.6 | 1 | UniProt (P75560) Pfam (PF00318) | Mycoplasmoides pneumoniae M129 | |
| 6 | F (B) | 30S ribosomal protein S3 | polymer | 273 | 30657.2 | 1 | UniProt (P41205) Pfam (PF07650) Pfam (PF00189) | Mycoplasmoides pneumoniae M129 | |
| 7 | G (C) | 30S ribosomal protein S4 | polymer | 205 | 23817.6 | 1 | UniProt (P46775) Pfam (PF00163) Pfam (PF01479) | Mycoplasmoides pneumoniae M129 | |
| 8 | H (D) | 30S ribosomal protein S5 | polymer | 219 | 24138.0 | 1 | UniProt (Q50301) Pfam (PF00333) Pfam (PF03719) | Mycoplasmoides pneumoniae M129 | |
| 9 | I (E) | 30S ribosomal protein S6 | polymer | 215 | 25430.5 | 1 | UniProt (P75543) Pfam (PF01250) | Mycoplasmoides pneumoniae M129 | |
| 10 | J (F) | 30S ribosomal protein S7 | polymer | 155 | 17897.0 | 1 | UniProt (P75545) Pfam (PF00177) | Mycoplasmoides pneumoniae M129 | |
| 11 | K (G) | 30S ribosomal protein S8 | polymer | 142 | 15903.1 | 1 | UniProt (Q50304) Pfam (PF00410) | Mycoplasmoides pneumoniae M129 | |
| 12 | L (H) | 30S ribosomal protein S9 | polymer | 132 | 15149.7 | 1 | UniProt (P75179) Pfam (PF00380) | Mycoplasmoides pneumoniae M129 | |
| 13 | M (I) | 30S ribosomal protein S10 | polymer | 108 | 12226.6 | 1 | UniProt (P75581) Pfam (PF00338) | Mycoplasmoides pneumoniae M129 | |
| 14 | N (J) | 30S ribosomal protein S11 | polymer | 121 | 12709.9 | 1 | UniProt (Q50296) Pfam (PF00411) | Mycoplasmoides pneumoniae M129 | |
| 15 | O (K) | 30S ribosomal protein S12 | polymer | 139 | 15666.6 | 1 | UniProt (P75546) Pfam (PF00164) | Mycoplasmoides pneumoniae M129 | |
| 16 | P (L) | 30S ribosomal protein S13 | polymer | 124 | 14209.6 | 1 | UniProt (Q50297) Pfam (PF00416) | Mycoplasmoides pneumoniae M129 | |
| 17 | Q (M) | 30S ribosomal protein S14 type Z | polymer | 61 | 6901.4 | 1 | UniProt (Q50305) Pfam (PF00253) | Mycoplasmoides pneumoniae M129 | |
| 18 | R (N) | 30S ribosomal protein S15 | polymer | 86 | 9921.7 | 1 | UniProt (P75173) Pfam (PF00312) | Mycoplasmoides pneumoniae M129 | |
| 19 | S (O) | 30S ribosomal protein S16 | polymer | 94 | 10806.9 | 1 | UniProt (A0A0H3DLS7) Pfam (PF00886) UniProt (by SIFTS) (P75131) | Mycoplasmoides pneumoniae M129 | |
| 20 | T (P) | 30S ribosomal protein S17 | polymer | 85 | 9859.6 | 1 | UniProt (Q50309) Pfam (PF00366) | Mycoplasmoides pneumoniae M129 | |
| 21 | U (Q) | 30S ribosomal protein S18 | polymer | 104 | 12411.5 | 1 | UniProt (P75541) Pfam (PF01084) | Mycoplasmoides pneumoniae M129 | |
| 22 | V (R) | 30S ribosomal protein S19 | polymer | 87 | 10057.6 | 1 | UniProt (P75576) Pfam (PF00203) | Mycoplasmoides pneumoniae M129 | |
| 23 | W (S) | 30S ribosomal protein S20 | polymer | 87 | 9993.6 | 1 | UniProt (P75237) Pfam (PF01649) | Mycoplasmoides pneumoniae M129 | |
| 24 | X (T) | 30S ribosomal protein S21 | polymer | 60 | 7539.2 | 1 | UniProt (P57079) | Mycoplasmoides pneumoniae M129 | |
| 25 | Y (Y) | mRNA | polymer | 21 | 6698.0 | 1 | Mycoplasmoides pneumoniae M129 | ||
| 26 | Z (x) | 50S ribosomal protein L31 | polymer | 97 | 10980.7 | 1 | UniProt (P78020) Pfam (PF01197) | Mycoplasmoides pneumoniae M129 | |
| 27 | AA, DA (5) | SPERMIDINE | non-polymer | 145.2 | 2 | Chemie (SPD) | |||
| 28 | BA, EA (5) | 1,4-DIAMINOBUTANE | non-polymer | 88.2 | 2 | Chemie (PUT) | |||
| 29 | CA (5) | PENTANE-1,5-DIAMINE | non-polymer | 102.2 | 1 | Chemie (N2P) | |||
| 30 | AB, AC, AD, AE, BB... (5, K, L, P, Y...) | MAGNESIUM ION | non-polymer | 24.3 | 103 | Chemie (MG) | |||
| 31 | CE, EE (M, Q) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 32 | GE, HE (5, A) | water | water | 18.0 | 2 | Chemie (HOH) |
Sequence modifications
5: 1 - 1520 (GenBank: 26117688)
7: 1 - 75 (GenBank: 26117688)
| PDB | External Database | Details |
|---|---|---|
| A 1003 | G 119315 | conflict |
| PDB | External Database | Details |
|---|---|---|
| G 17 | - | insertion |
| C 55 | U 358889 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 26 |
| Total formula weight | 1817220.7 | |
| Non-Polymers* | Number of molecules | 110 |
| Total formula weight | 3203.2 | |
| All* | Total formula weight | 1820423.9 |
