8P5V
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum in complex with the product succinyl-CoA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | 2-oxoglutarate dehydrogenase E1/E2 component | polymer | 1223 | 134972.1 | 6 | UniProt (Q8NRC3) Pfam (PF16078) Pfam (PF00198) Pfam (PF00676) Pfam (PF02779) Pfam (PF16870) | Corynebacterium glutamicum ATCC 13032 | ODH E1/E2 component |
| 2 | AA, G, K, O, S... (F, A, B, C, D...) | MAGNESIUM ION | non-polymer | 24.3 | 6 | Chemie (MG) | |||
| 3 | BA, H, L, P, T... (F, A, B, C, D...) | ACETYL COENZYME *A | non-polymer | 809.6 | 6 | Chemie (ACO) | |||
| 4 | CA, I, M, Q, U... (F, A, B, C, D...) | THIAMINE DIPHOSPHATE | non-polymer | 425.3 | 6 | Chemie (TPP) | |||
| 5 | DA, J, N, R, V... (F, A, B, C, D...) | SUCCINYL-COENZYME A | non-polymer | 867.6 | 6 | Chemie (SCA) | |||
| 6 | EA, FA, GA, HA, IA... (A, B, C, D, E...) | water | water | 18.0 | 1280 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 1 - 1221 (UniProt: Q8NRC3)
| PDB | External Database | Details |
|---|---|---|
| Gly -1 | - | expression tag |
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 809832.5 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 12760.8 | |
| All* | Total formula weight | 822593.3 |
