Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8P4V

80S yeast ribosome in complex with HaterumaimideQ

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, TA
(1, AR)
25S ribosomal RNApolymer33961097493.92GenBank (834774822)Saccharomyces cerevisiae (brewer's yeast)
2B, UA
(3, AS)
5S ribosomal RNApolymer12138951.12GenBank (1329886537)Saccharomyces cerevisiae (brewer's yeast)
3C, VA
(4, AT)
5.8S ribosomal RNApolymer15850682.92GenBank (1331532632)Saccharomyces cerevisiae (brewer's yeast)
4D, WA
(j, CD)
60S ribosomal protein L2-Apolymer25427463.62UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae (brewer's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
5E, XA
(k, CE)
60S ribosomal protein L3polymer38743850.82UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
6F, YA
(l, CF)
60S ribosomal protein L4-Apolymer36239159.12UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae (brewer's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
7G, ZA
(m, CG)
60S ribosomal protein L5polymer29733764.82UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
Saccharomyces cerevisiae (brewer's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
8AB, H
(n, CH)
60S ribosomal protein L6-Apolymer17620000.62UniProt (Q02326)
Pfam (PF01159)
Saccharomyces cerevisiae (brewer's yeast)L17,Large ribosomal subunit protein eL6-A,RP18,YL16
9BB, I
(o, CI)
60S ribosomal protein L7-Apolymer24427686.32UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
Saccharomyces cerevisiae (brewer's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
10CB, J
(p, CJ)
60S ribosomal protein L8-Apolymer25628175.82UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae (brewer's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
11DB, K
(q, CK)
60S ribosomal protein L9-Apolymer19121605.12UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae (brewer's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
12EB, L
(r, CL)
60S ribosomal protein L10polymer22125410.52UniProt (P41805)
Pfam (PF00252)
Saccharomyces cerevisiae (brewer's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
13FB, M
(s, CM)
Large ribosomal subunit protein uL5Bpolymer17419785.72UniProt (Q3E757)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P0C0W9)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L11-B,L16,RP39,YL22
14GB, N
(t, CN)
60S ribosomal protein L13-Apolymer19922604.22UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL13-A
15HB, O
(u, CO)
60S ribosomal protein L14-Apolymer13815195.12UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL14-A
16IB, P
(v, CP)
60S ribosomal protein L15-Apolymer20424482.42UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae (brewer's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
17JB, Q
(w, CQ)
60S ribosomal protein L16-Apolymer19922247.22UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae (brewer's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
18KB, R
(x, CR)
60S ribosomal protein L17-Apolymer18420589.52UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae (brewer's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
19LB, S
(y, CS)
60S ribosomal protein L18-Apolymer18620609.32UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL18-A,RP28
20MB, T
(z, CT)
60S ribosomal protein L19-Apolymer18921762.32UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae (brewer's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
21NB, U
(0, CU)
60S ribosomal protein L20-Apolymer17220478.92UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae (brewer's yeast)L18a,Large ribosomal subunit protein eL20-A
22OB, V
(2, CV)
60S ribosomal protein L21-Apolymer16018279.32UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL21-A
23PB, W
(5, CW)
60S ribosomal protein L22-Apolymer12113711.42UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae (brewer's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
24QB, X
(6, CX)
60S ribosomal protein L23-Apolymer13714494.02UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae (brewer's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
25RB, Y
(7, CY)
60S ribosomal protein L24-Apolymer15517661.72UniProt (P04449)
Pfam (PF01246)
Saccharomyces cerevisiae (brewer's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
26SB, Z
(8, CZ)
60S ribosomal protein L25polymer14215787.62UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
27AA, TB
(9, DA)
60S ribosomal protein L26-Apolymer12714265.82UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiae (brewer's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
28BA, UB
(AA, DB)
60S ribosomal protein L27-Apolymer13615568.42UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL27-A
29CA, VB
(AB, DC)
60S ribosomal protein L28polymer14916761.72UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae (brewer's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
30DA, WB
(AC, DD)
60S ribosomal protein L29polymer596691.92UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL29,YL43
31EA, XB
(AD, DE)
60S ribosomal protein L30polymer10511430.42UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae (brewer's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
32FA, YB
(AE, DF)
60S ribosomal protein L31-Apolymer11312980.22UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae (brewer's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
33GA, ZB
(AF, DG)
60S ribosomal protein L32polymer13014809.42UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL32
34AC, HA
(AG, DH)
60S ribosomal protein L33-Apolymer10712177.12UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae (brewer's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
35BC, IA
(AH, DI)
60S ribosomal protein L34-Apolymer12113673.22UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL34-A
36CC, JA
(AI, DJ)
60S ribosomal protein L35-Apolymer12013942.62UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein uL29-A
37DC, KA
(AJ, DK)
60S ribosomal protein L36-Apolymer10011151.32UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae (brewer's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
38EC, LA
(AK, DL)
60S ribosomal protein L37-Apolymer889877.42UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae (brewer's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
39FC, MA
(AL, DM)
60S ribosomal protein L38polymer788845.62UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL38
40GC, NA
(AM, DN)
60S ribosomal protein L39polymer516358.62UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae (brewer's yeast)L46,Large ribosomal subunit protein eL39,YL40
41HC, OA
(AN, DO)
Ubiquitin-60S ribosomal protein L40polymer12814583.12UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)
Saccharomyces cerevisiae (brewer's yeast)
42IC, PA
(AO, DP)
60S ribosomal protein L41-Apolymer253354.22UniProt (P0CX86)
Pfam (PF05162)
Saccharomyces cerevisiae (brewer's yeast)L47,Large ribosomal subunit protein eL41-A,YL41
43JC, QA
(AP, DQ)
60S ribosomal protein L42-Apolymer10612246.72UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiae (brewer's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
44KC, RA
(AQ, DR)
60S ribosomal protein L43-Apolymer9210113.02UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae (brewer's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
45MC, SA
(i, sM)
Suppressor protein STM1polymer27330048.02UniProt (P39015)
Pfam (PF09598)
Saccharomyces cerevisiae (brewer's yeast)3BP1,GU4 nucleic-binding protein 2,G4p2 protein,POP2 multicopy suppressor protein 4,Ribosomal subunits association factor,AF,TOM1 suppressor protein 1,Triplex-binding protein 1
46LC
(p0)
60S acidic protein P0polymer31133217.31Saccharomyces cerevisiae
47NC, VD
(A, sR)
18S ribosomal RNApolymer1800579761.92GenBank (874346701)Saccharomyces cerevisiae (brewer's yeast)
48OC, XD
(B, s0)
40S ribosomal protein S0-Apolymer25228051.32UniProt (P32905)
Pfam (PF00318)
Saccharomyces cerevisiae (brewer's yeast)Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
49PC, YD
(C, s1)
40S ribosomal protein S1-Apolymer25528798.52UniProt (P33442)
Pfam (PF01015)
Saccharomyces cerevisiae (brewer's yeast)RP10A,Small ribosomal subunit protein eS1-A
50QC, ZD
(D, s2)
40S ribosomal protein S2polymer25427490.82UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
Saccharomyces cerevisiae (brewer's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
51AE, RC
(E, s3)
Small ribosomal subunit protein uS3polymer24026542.82UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S3,RP13,YS3
52BE, SC
(F, s4)
40S ribosomal protein S4-Apolymer26129469.32UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Saccharomyces cerevisiae (brewer's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
53CE, TC
(G, s5)
40S ribosomal protein S5polymer22525072.62UniProt (P26783)
Pfam (PF00177)
Saccharomyces cerevisiae (brewer's yeast)RP14,S2,Small ribosomal subunit protein uS7,YS8
54DE, UC
(H, s6)
40S ribosomal protein S6-Apolymer23627054.52UniProt (P0CX37)
Pfam (PF01092)
Saccharomyces cerevisiae (brewer's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
55EE, VC
(I, s7)
40S ribosomal protein S7-Apolymer19021658.22UniProt (P26786)
Pfam (PF01251)
Saccharomyces cerevisiae (brewer's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
56FE, WC
(J, s8)
40S ribosomal protein S8-Apolymer20022537.82UniProt (P0CX39)
Pfam (PF01201)
Saccharomyces cerevisiae (brewer's yeast)RP19,S14,Small ribosomal subunit protein eS8-A,YS9
57GE, XC
(K, s9)
40S ribosomal protein S9-Apolymer19722487.92UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
Saccharomyces cerevisiae (brewer's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
58HE, YC
(L, c0)
40S ribosomal protein S10-Apolymer10512757.42UniProt (Q08745)
Pfam (PF03501)
Saccharomyces cerevisiae (brewer's yeast)Small ribosomal subunit protein eS10-A
59IE, ZC
(M, c1)
40S ribosomal protein S11-Apolymer15617785.92UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
Saccharomyces cerevisiae (brewer's yeast)RP41,S18,Small ribosomal subunit protein uS17-A,YS12
60AD, JE
(N, c2)
40S ribosomal protein S12polymer14315488.62UniProt (P48589)
Pfam (PF01248)
Saccharomyces cerevisiae (brewer's yeast)Small ribosomal subunit protein eS12
61BD, KE
(O, c3)
40S ribosomal protein S13polymer15117059.92UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
Saccharomyces cerevisiae (brewer's yeast)S27a,Small ribosomal subunit protein uS15,YS15
62CD, LE
(P, c4)
40S ribosomal protein S14-Bpolymer13814675.82UniProt (P39516)
Pfam (PF00411)
UniProt (by SIFTS) (P06367)
Saccharomyces cerevisiae (brewer's yeast)RP59B,Small ribosomal subunit protein uS11-B
63DD, ME
(Q, c5)
40S ribosomal protein S15polymer14216031.92UniProt (Q01855)
Pfam (PF00203)
Saccharomyces cerevisiae (brewer's yeast)RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
64ED, NE
(R, c6)
40S ribosomal protein S16-Apolymer14315877.52UniProt (P0CX51)
Pfam (PF00380)
Saccharomyces cerevisiae (brewer's yeast)RP61R,Small ribosomal subunit protein uS9-A
65FD
(S)
40S ribosomal protein S17-Bpolymer13615835.41UniProt (P14127)
Pfam (PF00833)
UniProt (by SIFTS) (P02407)
Saccharomyces cerevisiae (brewer's yeast)RP51B,Small ribosomal subunit protein eS17-B
66GD, PE
(T, c8)
40S ribosomal protein S18-Apolymer14617071.62UniProt (P0CX55)
Pfam (PF00416)
Saccharomyces cerevisiae (brewer's yeast)Small ribosomal subunit protein uS13-A
67HD, QE
(U, c9)
40S ribosomal protein S19-Apolymer14415942.12UniProt (P07280)
Pfam (PF01090)
Saccharomyces cerevisiae (brewer's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
68ID, RE
(V, d0)
Small ribosomal subunit protein uS10polymer12113929.02UniProt (P38701)
Pfam (PF00338)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S20
69JD, SE
(W, d1)
40S ribosomal protein S21-Apolymer879758.82UniProt (P0C0V8)
Pfam (PF01249)
Saccharomyces cerevisiae (brewer's yeast)S26,Small ribosomal subunit protein eS21-A,YS25
70KD, TE
(X, d2)
40S ribosomal protein S22-Apolymer13014650.12UniProt (P0C0W1)
Pfam (PF00410)
Saccharomyces cerevisiae (brewer's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
71LD, UE
(Y, d3)
40S ribosomal protein S23-Apolymer14516073.92UniProt (P0CX29)
Pfam (PF00164)
Saccharomyces cerevisiae (brewer's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
72MD, VE
(Z, d4)
40S ribosomal protein S24-Apolymer13515362.82UniProt (P0CX31)
Pfam (PF01282)
Saccharomyces cerevisiae (brewer's yeast)RP50,Small ribosomal subunit protein eS24-A
73ND, WE
(a, d5)
40S ribosomal protein S25-Apolymer10812067.32UniProt (Q3E792)
Pfam (PF03297)
Saccharomyces cerevisiae (brewer's yeast)RP45,S31,Small ribosomal subunit protein eS25-A,YS23
74OD, XE
(b, d6)
Small ribosomal subunit protein eS26Bpolymer11913480.92UniProt (P39939)
Pfam (PF01283)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S26-B
75PD, YE
(c, d7)
40S ribosomal protein S27-Apolymer828893.42UniProt (P35997)
Pfam (PF01667)
Saccharomyces cerevisiae (brewer's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
76QD, ZE
(d, d8)
40S ribosomal protein S28-Apolymer677605.82UniProt (Q3E7X9)
Pfam (PF01200)
Saccharomyces cerevisiae (brewer's yeast)S33,Small ribosomal subunit protein eS28-A,YS27
77AF, RD
(e, d9)
Small ribosomal subunit protein uS14Apolymer566675.72UniProt (P41057)
Pfam (PF00253)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S29-A,S36,YS29
78BF, SD
(f, e0)
40S ribosomal protein S30-Apolymer637137.52UniProt (P0CX33)
Pfam (PF04758)
Saccharomyces cerevisiae (brewer's yeast)Small ribosomal subunit protein eS30-A
79CF, TD
(g, e1)
Ubiquitinpolymer15217254.22UniProt (P05759)
Pfam (PF00240)
Pfam (PF01599)
Saccharomyces cerevisiae (brewer's yeast)
80UD, WD
(h, Rb)
Guanine nucleotide-binding protein subunit beta-like proteinpolymer31934841.22UniProt (P38011)
Pfam (PF00400)
Saccharomyces cerevisiae (brewer's yeast)Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
81OE
(c7)
40S ribosomal protein S17-Apolymer13615820.41UniProt (P02407)
Pfam (PF00833)
Saccharomyces cerevisiae (brewer's yeast)RP51A,Small ribosomal subunit protein eS17-A
82AAC, ABC, AFA, AG, AGA...
(A, 1, 3, sR, AR...)
osmium (III) hexamminenon-polymer286.4953Chemie (OHX)
83AAA, AAB, ABA, ABB, ACA...
(1, AR, A, 4, r...)
MAGNESIUM IONnon-polymer24.31477Chemie (MG)
84EIA, JRB, KRB, LRB, MLA...
(1, AR, j, sR)
POTASSIUM IONnon-polymer39.17Chemie (K)
85CJA, XSB
(1, AR)
SPERMIDINEnon-polymer145.22Chemie (SPD)
86DJA, YSB
(1, AR)
(3~{R})-3-[(1~{S})-2-[(1~{R},3~{S},4~{a}~{S},8~{a}~{S})-5,5,8~{a}-trimethyl-2-methylidene-3-oxidanyl-3,4,4~{a},6,7,8-hexahydro-1~{H}-naphthalen-1-yl]-1-oxidanyl-ethyl]pyrrolidine-2,5-dionenon-polymer349.52Chemie (X1K)
87AJC, AYB, DYB, HYB, LVC...
(g, DO, DQ, DR, d6...)
ZINC IONnon-polymer65.415Chemie (ZN)
88HIC
(A)
OSMIUM IONnon-polymer190.21Chemie (OS)
89AWC, BWC, CWC, DWC, EWC...
(CP, CR, CT, DG, A...)
waterwater18.0503Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains159
Total formula weight6305190.2
Non-Polymers*Number of molecules2457
Total formula weight311238.8
All*Total formula weight6616429.0
*Water molecules are not included.

236620

PDB entries from 2025-05-28

PDB statisticsPDBj update infoContact PDBjnumon