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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8P2K

Ternary complex of translating ribosome, NAC and METAP1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1B528S rRNApolymer48081557519.51Oryctolagus cuniculus (rabbit)
2B75S rRNApolymer12038691.91GenBank (4CXE_4)Oryctolagus cuniculus (rabbit)
3B85.8S rRNApolymer15850809.01GenBank (GBCN01009604.1)Oryctolagus cuniculus (rabbit)
4BA60S ribosomal protein L8polymer25728103.91UniProt (F2X241)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Oryctolagus cuniculus (rabbit)
5BBRibosomal protein L3polymer40346121.01UniProt (G1TL06)
Pfam (PF00297)
In PDB		Oryctolagus cuniculus (rabbit)
6BC60S ribosomal protein L4polymer41346430.91UniProt (G1SVW5)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Oryctolagus cuniculus (rabbit)
7BDRibosomal protein L5 eukaryotic C-terminal domain-containing proteinpolymer29734509.91UniProt (G1SYJ6)
UniProt (by SIFTS) (P19949)
In PDB		Oryctolagus cuniculus (rabbit)
8BE60S ribosomal protein L6polymer29133028.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)
In PDB		Oryctolagus cuniculus (rabbit)
9BFRibosomal Protein uL30polymer24729201.81UniProt (G1TUB1)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Oryctolagus cuniculus (rabbit)
10BG60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
In PDB		Oryctolagus cuniculus (rabbit)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
11BH60S ribosomal protein L9polymer19221871.41UniProt (G1SWI6)
Pfam (PF00347)
In PDB		Oryctolagus cuniculus (rabbit)
12BI60S ribosomal protein L10polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)
In PDB		Oryctolagus cuniculus (rabbit)Ribosomal protein L10
13BJ60S ribosomal protein L11polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Oryctolagus cuniculus (rabbit)
14BKGlucose-6-phosphate isomerasepolymer657967.21UniProt (P06744)
In PDB		Oryctolagus cuniculus (rabbit)GPI,Autocrine motility factor,AMF,Neuroleukin,NLK,Phosphoglucose isomerase,PGI,Phosphohexose isomerase,PHI,Sperm antigen 36,SA-36
15BL60S ribosomal protein L13polymer21124331.71UniProt (G1TKB3)
Pfam (PF01294)
In PDB		Oryctolagus cuniculus (rabbit)L13
16BM60S ribosomal protein L14polymer21823870.51UniProt (G1SZ12)
Pfam (PF01929)
In PDB		Oryctolagus cuniculus (rabbit)
17BNRibosomal protein L15polymer20424207.31UniProt (G1T0C1)
Pfam (PF00827)
In PDB		Oryctolagus cuniculus (rabbit)
18BO60S ribosomal protein L13apolymer20323533.31UniProt (A0A0N8ETI8)
Pfam (PF00572)
In PDB		Oryctolagus cuniculus (rabbit)
19BPuL22polymer18421444.21UniProt (G1TVT6)
Pfam (PF00237)
UniProt (by SIFTS) (G1SCJ6)
In PDB		Oryctolagus cuniculus (rabbit)
20BQeL18polymer18821699.71UniProt (F6QKI9)
Pfam (PF17135)
In PDB		Oryctolagus cuniculus (rabbit)
21BRRibosomal protein L19polymer19623535.31UniProt (G1TYL6)
Pfam (PF01280)
In PDB		Oryctolagus cuniculus (rabbit)
22BS60S ribosomal protein L18apolymer17620749.41UniProt (A0A1Z5LHJ5)
Pfam (PF01775)
In PDB		Oryctolagus cuniculus (rabbit)
23BT60S ribosomal protein L21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)
In PDB		Oryctolagus cuniculus (rabbit)eL21
24BU60S ribosomal protein L22polymer12814756.91UniProt (G1TSG1)
Pfam (PF01776)
In PDB		Oryctolagus cuniculus (rabbit)
25BVRibosomal protein L23polymer14014892.51UniProt (G1T6D1)
Pfam (PF00238)
In PDB		Oryctolagus cuniculus (rabbit)
26BWRibosomal protein L24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)
In PDB		Oryctolagus cuniculus (rabbit)eL24
27BXRibosomal_L23eN domain-containing proteinpolymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Oryctolagus cuniculus (rabbit)uL23
28BYRibosomal protein L26polymer14517303.41UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Oryctolagus cuniculus (rabbit)
29BZ60S ribosomal protein L27polymer13615835.81UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)
In PDB		Oryctolagus cuniculus (rabbit)
30Ba60S ribosomal protein L27apolymer14816635.61UniProt (G1SNY0)
Pfam (PF00828)
In PDB		Oryctolagus cuniculus (rabbit)
31Bb60S ribosomal protein L29polymer24526721.71UniProt (G1SGR6)
Pfam (PF01779)
In PDB		Oryctolagus cuniculus (rabbit)
32Bc60S ribosomal protein L30polymer11512807.11UniProt (G1TDL2)
Pfam (PF01248)
In PDB		Oryctolagus cuniculus (rabbit)eL30
33Bd60S ribosomal protein L31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)
In PDB		Oryctolagus cuniculus (rabbit)eL31
34BeRibosomal protein L32polymer13515898.91UniProt (G1U437)
Pfam (PF01655)
UniProt (by SIFTS) (G1TUN8)
In PDB		Oryctolagus cuniculus (rabbit)eL32
35Bf60S ribosomal protein L35apolymer11012580.81UniProt (G1SF08)
Pfam (PF01247)
In PDB		Oryctolagus cuniculus (rabbit)eL33
36Bg60S ribosomal protein L34polymer11713326.11UniProt (G1TXG5)
Pfam (PF01199)
In PDB		Oryctolagus cuniculus (rabbit)
37Bh60S ribosomal protein L35polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)
In PDB		Oryctolagus cuniculus (rabbit)uL29
38Bi60S ribosomal protein L36polymer10512263.81UniProt (G1TTQ5)
Pfam (PF01158)
In PDB		Oryctolagus cuniculus (rabbit)
39BjRibosomal protein L37polymer9711111.01UniProt (U3KPD5)
Pfam (PF01907)
In PDB		Oryctolagus cuniculus (rabbit)
40Bk60S ribosomal protein L38polymer708238.91UniProt (G1U001)
Pfam (PF01781)
In PDB		Oryctolagus cuniculus (rabbit)eL38
41Bl60S ribosomal protein L39-likepolymer516455.81UniProt (G1TTN1)
Pfam (PF00832)
In PDB		Oryctolagus cuniculus (rabbit)eL39
42BmUbiquitin-60S ribosomal protein L40polymer12814800.51UniProt (A0A2I3MBB6)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Oryctolagus cuniculus (rabbit)
43BoeL42polymer10612490.01UniProt (G1U344)
Pfam (PF00935)
UniProt (by SIFTS) (G1T040)
In PDB		Oryctolagus cuniculus (rabbit)
44Bp60S ribosomal protein L37apolymer9210299.41UniProt (G1SY53)
Pfam (PF01780)
In PDB		Oryctolagus cuniculus (rabbit)eL43
45Br60S ribosomal protein L28polymer13715844.71UniProt (G1U7L1)
Pfam (PF01778)
In PDB		Oryctolagus cuniculus (rabbit)
46Bs60S acidic ribosomal protein P0polymer31834380.51UniProt (G1SPK4)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
In PDB		Oryctolagus cuniculus (rabbit)uL10
47Bt60S ribosomal protein L12polymer16517847.61UniProt (G1SMR7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Oryctolagus cuniculus (rabbit)
48BvRibosomal protein uL1polymer21724875.41UniProt (G1SKZ8)
Pfam (PF00687)
In PDB		Oryctolagus cuniculus (rabbit)
49MAMethionine aminopeptidase 1polymer38643274.21UniProt (P53582)
Pfam (PF15801)
Pfam (PF00557)
In PDB		Homo sapiens (human)MAP 1,MetAP 1,Peptidase M 1
50NaNascent polypeptide-associated complex subunit alphapolymer21523406.81UniProt (Q13765)
Pfam (PF01849)
Pfam (PF19026)
In PDB		Homo sapiens (human)NAC-alpha,Alpha-NAC
51NbTranscription factor BTF3polymer13214493.81UniProt (A0A7I2YQL2)
Pfam (PF01849)
In PDB		Homo sapiens (human)
52A218s rRNApolymer1870603928.31GenBank (GBCT01000564.1)Oryctolagus cuniculus (rabbit)
53AA40S ribosomal protein S27polymer849480.21UniProt (G1TZ76)
Pfam (PF01667)
In PDB		Oryctolagus cuniculus (rabbit)
54AB40S ribosomal protein S28polymer697855.11UniProt (G1TIB4)
Pfam (PF01200)
In PDB		Oryctolagus cuniculus (rabbit)
55ACRibosomal protein S27apolymer15618004.01UniProt (G1SK22)
Pfam (PF00240)
Pfam (PF01599)
In PDB		Oryctolagus cuniculus (rabbit)
56AD40S ribosomal protein S30polymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)
In PDB		Oryctolagus cuniculus (rabbit)
57AEeS26polymer11513047.51UniProt (A0A2K5LQY6)
Pfam (PF01283)
In PDB		Oryctolagus cuniculus (rabbit)
58AFRACK1polymer31735115.71UniProt (G1SJB4)
Pfam (PF00400)
In PDB		Oryctolagus cuniculus (rabbit)WD_REPEATS_REGION domain-containing protein
59AG40S ribosomal protein S29polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)
In PDB		Oryctolagus cuniculus (rabbit)uS14
60AIE-site tRNApolymer7615209.51Oryctolagus cuniculus
61ATP-site Val-tRNApolymer7624451.61Oryctolagus cuniculus
62AZ40S ribosomal protein SApolymer29532970.01UniProt (G1TLT8)
Pfam (PF00318)
Pfam (PF16122)
In PDB		Oryctolagus cuniculus (rabbit)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
63Aa40S ribosomal protein S3apolymer26430002.11UniProt (G1SS70)
Pfam (PF01015)
In PDB		Oryctolagus cuniculus (rabbit)RPS3A
64Ab40S ribosomal protein S2polymer29331285.41UniProt (O18789)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Oryctolagus cuniculus (rabbit)
65Ac40S ribosomal protein S3polymer28131146.61UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Oryctolagus cuniculus (rabbit)uS3
66Ad40S ribosomal protein S4polymer26329654.91UniProt (G1TK17)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB		Oryctolagus cuniculus (rabbit)
67AeRibosomal protein S5polymer20422913.51UniProt (G1TFM5)
Pfam (PF00177)
In PDB		Oryctolagus cuniculus (rabbit)
68Af40S ribosomal protein S6polymer24928751.91UniProt (G1TM55)
Pfam (PF01092)
In PDB		Oryctolagus cuniculus (rabbit)
69Ag40S ribosomal protein S7polymer43247356.21UniProt (G1SVB0)
In PDB		Oryctolagus cuniculus (rabbit)
70Ah40S ribosomal protein S8polymer20824263.41UniProt (G1TJW1)
Pfam (PF01201)
In PDB		Oryctolagus cuniculus (rabbit)
71Ai40S ribosomal protein S9polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Oryctolagus cuniculus (rabbit)
72AjS10_plectin domain-containing proteinpolymer16518933.81UniProt (G1TPV3)
Pfam (PF03501)
In PDB		Oryctolagus cuniculus (rabbit)eS10
73Ak40S ribosomal protein S11polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Oryctolagus cuniculus (rabbit)
74Al40S ribosomal protein S12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)
In PDB		Oryctolagus cuniculus (rabbit)
75Am40S ribosomal protein S13polymer15117259.41UniProt (G1SP51)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Oryctolagus cuniculus (rabbit)uS15
76An40S ribosomal protein S14polymer15116316.81UniProt (G1U472)
Pfam (PF00411)
UniProt (by SIFTS) (G1T1F0)
In PDB		Oryctolagus cuniculus (rabbit)
77Ao40S ribosomal protein uS19polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)
In PDB		Oryctolagus cuniculus (rabbit)
78ApuS9polymer17219213.51UniProt (G1SGX4)
Pfam (PF00380)
In PDB		Oryctolagus cuniculus (rabbit)
79Aq40S ribosomal protein eS17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)
In PDB		Oryctolagus cuniculus (rabbit)
80Ar40S ribosomal protein S18polymer15217801.81UniProt (G1TPG3)
Pfam (PF00416)
In PDB		Oryctolagus cuniculus (rabbit)
81As40S ribosomal protein S19polymer14516104.61UniProt (G1TN62)
Pfam (PF01090)
In PDB		Oryctolagus cuniculus (rabbit)
82At40S ribosomal protein uS10polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)
In PDB		Oryctolagus cuniculus (rabbit)
83Au40S ribosomal protein S21polymer839181.41UniProt (A0A1Z5KTU7)
Pfam (PF01249)
In PDB		Oryctolagus cuniculus (rabbit)
84AvRibosomal protein S15apolymer13014865.61UniProt (G1TG89)
Pfam (PF00410)
In PDB		Oryctolagus cuniculus (rabbit)
85Aw40S ribosomal protein S23polymer14315860.71UniProt (G1SZ47)
Pfam (PF00164)
In PDB		Oryctolagus cuniculus (rabbit)
86Ax40S ribosomal protein S24polymer13015107.91UniProt (G1T3D8)
Pfam (PF01282)
In PDB		Oryctolagus cuniculus (rabbit)
87Ay40S ribosomal protein S25polymer12413645.01UniProt (G1TDB3)
Pfam (PF03297)
In PDB		Oryctolagus cuniculus (rabbit)
88Az60S ribosomal protein L41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)
In PDB		Oryctolagus cuniculus (rabbit)
89B5, Aa, Bv, Ae, AI...ANY 5'-MONOPHOSPHATE NUCLEOTIDEnon-polymer214.173Chemie (N)
90B5, A2SPERMIDINEnon-polymer145.230Chemie (SPD)
91B5, A2SPERMINEnon-polymer202.33Chemie (SPM)
92A2, B5, B8, BV, Ba...MAGNESIUM IONnon-polymer24.3420Chemie (MG)
93Bo, A2, B5, Bb, B8...UNKNOWN ATOM OR IONnon-polymer312Chemie (UNX)
94B7GUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
95BDACETYLAMINO-ACETIC ACIDnon-polymer117.11Chemie (AAC)
96Bp, AC, AE, AG, Bg...ZINC IONnon-polymer65.48Chemie (ZN)
97waterwater18.02117Chemie (HOH)
Sequence modifications
BD: 1 - 297 (UniProt: G1SYJ6)
PDBExternal DatabaseDetails
Unk 2Gly 2conflict
BF: 1 - 247 (UniProt: G1TUB1)
PDBExternal DatabaseDetails
Arg 61Gly 61conflict
Arg 93Gly 93conflict
Met 131Val 131conflict
Ile 153Val 153conflict
BG: 1 - 266 (UniProt: P62424)
PDBExternal DatabaseDetails
Leu 184Ile 184conflict
BK: 1 - 60 (UniProt: P06744)
PDBExternal DatabaseDetails
Met 60Val 60conflict
Met 61-expression tag
Met 62-expression tag
Met 63-expression tag
Met 64-expression tag
Val 65-expression tag
BL: 1 - 211 (UniProt: G1TKB3)
PDBExternal DatabaseDetails
Arg 74His 74conflict
Arg 190His 190conflict
BO: 1 - 203 (UniProt: A0A0N8ETI8)
PDBExternal DatabaseDetails
Leu 174Ile 174conflict
Asp 194Glu 194conflict
BQ: 1 - 188 (UniProt: F6QKI9)
PDBExternal DatabaseDetails
Arg 134Cys 134conflict
BR: 1 - 196 (UniProt: G1TYL6)
PDBExternal DatabaseDetails
Arg 38His 38conflict
Arg 151His 151conflict
BS: 1 - 176 (UniProt: A0A1Z5LHJ5)
PDBExternal DatabaseDetails
Asn 36Ile 36conflict
BU: 1 - 128 (UniProt: G1TSG1)
PDBExternal DatabaseDetails
Gly 32Arg 32conflict
Ala 36Glu 36conflict
Phe 39Ser 39conflict
Gly 54Arg 54conflict
Arg 97His 97conflict
Bk: 1 - 70 (UniProt: G1U001)
PDBExternal DatabaseDetails
Lys 24Asn 24conflict
Br: 1 - 137 (UniProt: G1U7L1)
PDBExternal DatabaseDetails
Arg 103His 103conflict
MA: 1 - 386 (UniProt: P53582)
PDBExternal DatabaseDetails
Asn 220Asp 220conflict
A2: 1 - 1870 (GenBank: GBCT01000564.1)
PDBExternal DatabaseDetails
B8n 1249C 3623conflict
4ac 1338C 3712conflict
4ac 1843C 4217conflict
Ab: 1 - 293 (UniProt: O18789)
PDBExternal DatabaseDetails
Ile 33Val 33conflict
Ala 101Ser 101conflict
Ad: 1 - 263 (UniProt: G1TK17)
PDBExternal DatabaseDetails
Gly 25Ser 25conflict
Arg 51Lys 51conflict
Thr 78Ala 78conflict
Val 156Met 156conflict
Ah: 1 - 208 (UniProt: G1TJW1)
PDBExternal DatabaseDetails
Arg 47Gly 47conflict
An: 1 - 151 (UniProt: G1U472)
PDBExternal DatabaseDetails
5f0 138Asp 155conflict
As: 1 - 145 (UniProt: G1TN62)
PDBExternal DatabaseDetails
Gly 119Trp 119conflict
Asn 142Lys 142conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains88
Total formula weight3952464.5
Non-Polymers*Number of molecules848
Total formula weight31966.1
All*Total formula weight3984430.6
*Water molecules are not included.

222036

PDB entries from 2024-07-03

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