8OWM
Crystal structure of glutamate dehydrogenase 2 from Arabidopsis thaliana binding Ca, NAD and 2,2-dihydroxyglutarate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Glutamate dehydrogenase 2 | polymer | 414 | 45027.2 | 6 | UniProt (Q38946) Pfam (PF02812) Pfam (PF00208) | Arabidopsis thaliana (thale cress) | GDH 2 |
| 2 | DB, G, HA, NB, R... (E, A, C, F, B...) | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | non-polymer | 663.4 | 6 | Chemie (NAD) | |||
| 3 | AA, CA, CB, DA, EB... (B, E, A, C, F...) | GLYCEROL | non-polymer | 92.1 | 26 | Chemie (GOL) | |||
| 4 | FB, HB, K, KB, LA... (E, A, C, F, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 12 | Chemie (EDO) | |||
| 5 | AB, EA, LB, N, SA... (D, B, E, A, C...) | 2,2-bis(oxidanyl)pentanedioic acid | non-polymer | 164.1 | 6 | Chemie (U5C) | |||
| 6 | BB, FA, MB, P, TA... (D, B, E, A, C...) | CALCIUM ION | non-polymer | 40.1 | 6 | Chemie (CA) | |||
| 7 | GA, Q, UA (B, A, C) | SODIUM ION | non-polymer | 23.0 | 3 | Chemie (NA) | |||
| 8 | BA, IA, JB, KA, QB... (B, C, E, F, D) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 7 | Chemie (PEG) | |||
| 9 | UB, VB, WB, XB, YB... (A, B, C, D, E...) | water | water | 18.0 | 2090 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 1 - 411 (UniProt: Q38946)
| PDB | External Database | Details |
|---|---|---|
| Ser -2 | - | expression tag |
| Asn -1 | - | expression tag |
| Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 270163.1 | |
| Non-Polymers* | Number of molecules | 66 |
| Total formula weight | 9156.8 | |
| All* | Total formula weight | 279319.9 |
