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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8OVE

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AASSU rRNApolymer2280734333.71Trypanosoma brucei brucei
2ABE-SITE TRNApolymer196106.71Trypanosoma brucei brucei
3BALUS_alpha rRNApolymer1920619662.41Trypanosoma brucei brucei
4BBLSUb rRNApolymer1536494694.21Trypanosoma brucei bruceiLSU_beta rRNA
5BC5.8S rRNApolymer20967019.71GenBank (10527)Trypanosoma brucei brucei
6BD5S rRNApolymer11938316.71GenBank (162230)Trypanosoma brucei brucei
7BESrRNA 1polymer21669132.71GenBank (10528)Trypanosoma brucei brucei
8BP40S ribosomal protein L14, putativepolymer18921521.51UniProt (Q383F5)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Trypanosoma brucei brucei
9BQRibosomal protein L15polymer22126461.01UniProt (Q38CY7)
Pfam (PF00827)
In PDB		Trypanosoma brucei brucei
10BR60S ribosomal protein L17, putativepolymer16619147.71UniProt (Q385T6)
Pfam (PF00237)
In PDB		Trypanosoma brucei brucei
11BS60S ribosomal protein L18apolymer17920950.51UniProt (Q382C4)
Pfam (PF01775)
In PDB		Trypanosoma brucei brucei
12BT60S ribosomal protein L19, putativepolymer26029494.11UniProt (Q57ZI7)
Pfam (PF01280)
In PDB		Trypanosoma brucei brucei
13BU60S ribosomal protein L21E, putativepolymer15918043.31UniProt (Q4FKD4)
Pfam (PF01157)
In PDB		Trypanosoma brucei brucei
14BW60S ribosomal protein L23, putativepolymer13914989.71UniProt (Q38DP2)
Pfam (PF00238)
In PDB		Trypanosoma brucei brucei
15BYRibosomal protein L24polymer12514633.31UniProt (O77067)
Pfam (PF01246)
In PDB		Trypanosoma brucei brucei
16BX60S ribosomal protein L23apolymer16418211.61UniProt (P41165)
Pfam (PF00276)
In PDB		Trypanosoma brucei bruceiL25
17BZ60S ribosomal protein L26, putativepolymer14316497.51UniProt (Q38D25)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Trypanosoma brucei brucei
18Bp60S ribosomal protein L38, putativepolymer829527.41UniProt (Q38FV6)
Pfam (PF01781)
In PDB		Trypanosoma brucei brucei
19Bq60S ribosomal protein L39, putativepolymer516568.01UniProt (Q57UJ8)
Pfam (PF00832)
In PDB		Trypanosoma brucei brucei
20Br60S ribosomal protein L4polymer37441941.21UniProt (Q582N2)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Trypanosoma brucei brucei
21Bt60S ribosomal protein L44polymer10612488.81UniProt (P17843)
Pfam (PF00935)
In PDB		Trypanosoma brucei brucei
22Bw60S ribosomal protein L7, putativepolymer25729416.71UniProt (Q57V35)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Trypanosoma brucei brucei
23Bx60S ribosomal protein L7apolymer27630945.61UniProt (Q57VM1)
Pfam (PF01248)
In PDB		Trypanosoma brucei brucei
24Bl60S ribosomal protein L35A, putativepolymer14917061.01UniProt (Q584G9)
Pfam (PF01247)
In PDB		Trypanosoma brucei brucei
25Bu60S ribosomal protein L5, putativepolymer30834710.21UniProt (Q38CY8)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Trypanosoma brucei brucei
26By60S ribosomal protein L9, putativepolymer18921897.41UniProt (Q38CD0)
Pfam (PF00347)
In PDB		Trypanosoma brucei brucei
27A040S ribosomal protein S3apolymer25629477.31UniProt (Q38BK6)
Pfam (PF01015)
In PDB		Trypanosoma brucei brucei
28A240S ribosomal protein S5, putativepolymer19021424.91UniProt (Q385D9)
Pfam (PF00177)
In PDB		Trypanosoma brucei brucei
29A540S ribosomal protein S8polymer22025001.41UniProt (Q57YL6)
Pfam (PF01201)
In PDB		Trypanosoma brucei brucei
30AD40S ribosomal protein S10, putativepolymer17219322.81UniProt (Q38B66)
Pfam (PF03501)
In PDB		Trypanosoma brucei brucei
31A8Putative ribosomal protein S29polymer576745.01Trypanosoma brucei brucei
32AE40S ribosomal proteins S11, putativepolymer17420132.51UniProt (Q38CI4)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Trypanosoma brucei brucei
33AG40S ribosomal protein S13, putativepolymer15117347.61UniProt (Q586C2)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Trypanosoma brucei brucei
34AI40S ribosomal protein S15, putativepolymer15217512.41UniProt (Q57XN7)
Pfam (PF00203)
In PDB		Trypanosoma brucei brucei
35AH40S ribosomal protein S14polymer14415540.91UniProt (P19800)
Pfam (PF00411)
In PDB		Trypanosoma brucei brucei
36AJ40S ribosomal protein S15a, putativepolymer13014669.31UniProt (Q580K6)
Pfam (PF00410)
In PDB		Trypanosoma brucei brucei
37AL40S ribosomal protein S17, putativepolymer14216259.21UniProt (Q382Z8)
Pfam (PF00833)
In PDB		Trypanosoma brucei brucei
38AM40S ribosomal protein S18, putativepolymer15317548.51UniProt (Q38B69)
Pfam (PF00416)
In PDB		Trypanosoma brucei brucei
39AORibosomal protein S19, putativepolymer16718891.51UniProt (Q583K7)
Pfam (PF01090)
In PDB		Trypanosoma brucei brucei
40AP40S ribosomal protein S2, putativepolymer26628688.11UniProt (Q388D3)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Trypanosoma brucei brucei
41AS40S ribosomal protein S23, putativepolymer14315963.71UniProt (Q38CD1)
Pfam (PF00164)
In PDB		Trypanosoma brucei brucei
42AU40S ribosomal protein S25polymer11312589.11UniProt (Q57XX0)
Pfam (PF03297)
In PDB		Trypanosoma brucei brucei
43AX40S ribosomal protein S3, putativepolymer21424259.41UniProt (Q38EW1)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Trypanosoma brucei brucei
44AZ40S ribosomal protein S33, putativepolymer10311186.91UniProt (Q57U30)
Pfam (PF01200)
In PDB		Trypanosoma brucei brucei
45A340S ribosomal protein S6polymer25028507.41UniProt (Q38CL9)
Pfam (PF01092)
In PDB		Trypanosoma brucei brucei
46AT40S ribosomal protein S24polymer13715722.81UniProt (Q38AM9)
Pfam (PF01282)
In PDB		Trypanosoma brucei brucei
47A140S ribosomal protein S4polymer27330704.21UniProt (Q386F2)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB		Trypanosoma brucei brucei
48AC40S ribosomal protein SApolymer27731396.01UniProt (Q383I8)
Pfam (PF00318)
In PDB		Trypanosoma brucei brucei
49Bc60S ribosomal protein L28, putativepolymer14616901.01UniProt (Q385E9)
Pfam (PF01778)
In PDB		Trypanosoma brucei brucei
50BzRibosomal protein L41polymer344348.41Trypanosoma brucei bruceieL41
51Bo60S ribosomal protein L37a, putativepolymer9310482.31UniProt (Q38AW9)
Pfam (PF01780)
In PDB		Trypanosoma brucei brucei
52BnRibosomal protein L37polymer8410128.91UniProt (Q386L1)
Pfam (PF01907)
In PDB		Trypanosoma brucei brucei
53BmRibosomal protein L36, putativepolymer10912492.01UniProt (Q38CY6)
Pfam (PF01158)
In PDB		Trypanosoma brucei brucei
54Bk60S ribosomal protein L35, putativepolymer12715187.31UniProt (Q38FW8)
Pfam (PF00831)
In PDB		Trypanosoma brucei brucei
55Bj60S ribosomal protein L34, putativepolymer17019396.31UniProt (Q383V6)
Pfam (PF01199)
In PDB		Trypanosoma brucei brucei
56Bi60S ribosomal protein L32, putativepolymer13215432.21UniProt (Q38CL1)
Pfam (PF01655)
In PDB		Trypanosoma brucei brucei
57Bg60S ribosomal protein L30polymer10511531.41UniProt (P49153)
Pfam (PF01248)
In PDB		Trypanosoma brucei brucei
58Bd60S ribosomal protein L29polymer718244.61UniProt (Q383S6)
Pfam (PF01779)
In PDB		Trypanosoma brucei brucei
59Bb60S ribosomal protein L27apolymer14516307.21UniProt (Q38DN9)
Pfam (PF00828)
In PDB		Trypanosoma brucei brucei
60Ba60S ribosomal protein L27polymer13315618.51UniProt (Q381J6)
Pfam (PF00467)
Pfam (PF01777)
In PDB		Trypanosoma brucei brucei
61BO60S ribosomal protein L13a, putativepolymer22225775.81UniProt (Q585J5)
Pfam (PF00572)
In PDB		Trypanosoma brucei brucei
62BN60S ribosomal protein L13polymer21825492.01UniProt (Q57V55)
Pfam (PF01294)
In PDB		Trypanosoma brucei brucei
63BL60S ribosomal protein L11, putativepolymer19422420.41UniProt (Q38EI9)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Trypanosoma brucei brucei
64BK60S ribosomal protein L10, putativepolymer21324785.31UniProt (Q38EC5)
Pfam (PF00252)
In PDB		Trypanosoma brucei brucei
65BI60S ribosomal protein L18polymer19321929.21UniProt (P50885)
Pfam (PF17135)
In PDB		Trypanosoma brucei brucei
66Be60S ribosomal protein L2, putativepolymer26028372.11UniProt (Q57W56)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Trypanosoma brucei brucei
67AK40S ribosomal protein S16, putativepolymer14917032.01UniProt (Q57VV0)
Pfam (PF00380)
In PDB		Trypanosoma brucei brucei
68A6Probable 40S ribosomal protein S9polymer19022098.71UniProt (P17959)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Trypanosoma brucei brucei
69BfRibosomal protein L3, mitochondrial, putativepolymer42948803.01UniProt (Q581Q1)
Pfam (PF00297)
In PDB		Trypanosoma brucei brucei
70AY40S ribosomal protein S30polymer667454.91UniProt (Q584U5)
Pfam (PF04758)
In PDB		Trypanosoma brucei brucei
71Bv60S ribosomal protein L6, putativepolymer19221232.01UniProt (Q389K1)
Pfam (PF01159)
In PDB		Trypanosoma brucei brucei
72Bh60S ribosomal subunit protein L31, putativepolymer18821752.91UniProt (Q38DH8)
Pfam (PF01198)
In PDB		Trypanosoma brucei brucei
73BFSrRNA 6polymer7824646.51GenBank (62359081)Trypanosoma brucei brucei
74BGSrRNA 2polymer18359196.11GenBank (10528)Trypanosoma brucei brucei
75BHSrRNA 4polymer13643694.81GenBank (10519)Trypanosoma brucei brucei
76BsUbiquitin-60S ribosomal protein L40polymer12814685.31UniProt (P21899)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Trypanosoma brucei brucei
77BV60S ribosomal protein L22, putativepolymer13015288.91UniProt (Q383R3)
Pfam (PF01776)
In PDB		Trypanosoma brucei brucei
78AzRNA-binding proteinpolymer27930340.91UniProt (Q382D5)
Pfam (PF00076)
In PDB		Trypanosoma brucei brucei
79AQRibosomal protein S10polymer11713377.61Trypanosoma brucei bruceiuS10
80AR40S ribosomal protein S21, putativepolymer19421228.81UniProt (Q385B8)
Pfam (PF01249)
In PDB		Trypanosoma brucei brucei
81AV40S ribosomal protein S26polymer11112837.21UniProt (Q384J9)
Pfam (PF01283)
In PDB		Trypanosoma brucei brucei
82AW40S ribosomal protein S27, putativepolymer869648.31UniProt (Q383V7)
Pfam (PF01667)
In PDB		Trypanosoma brucei brucei
83A440S ribosomal protein S7polymer20223889.21UniProt (Q38FD9)
Pfam (PF01251)
In PDB		Trypanosoma brucei brucei
84A7Guanine nucleotide-binding protein subunit beta-like proteinpolymer31834715.81UniProt (P69103)
Pfam (PF00400)
In PDB		Trypanosoma brucei bruceiActivated protein kinase C receptor homolog
85AHIS-THR-CYS-THRpolymer4461.51Trypanosoma brucei brucei
86AA, BA, BB, BW, A0...MAGNESIUM IONnon-polymer24.3149Chemie (MG)
87AA, BA, BB, AG, AP...POTASSIUM IONnon-polymer39.141Chemie (K)
88AA, BA, Bi, Be, BB...SODIUM IONnon-polymer23.051Chemie (NA)
89waterwater18.0323Chemie (HOH)
Sequence modifications
AR: 1 - 194 (UniProt: Q385B8)
PDBExternal DatabaseDetails
Lys 88Gly 88conflict
A7: 1 - 318 (UniProt: P69103)
PDBExternal DatabaseDetails
Thr 28Ala 28conflict
Ser 283Lys 283conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains85
Total formula weight3619892.8
Non-Polymers*Number of molecules241
Total formula weight6397.0
All*Total formula weight3626289.8
*Water molecules are not included.

222036

PDB entries from 2024-07-03

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