8OVD
Respiratory supercomplex (III2-IV2) from Mycobacterium smegmatis
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | O, C | Cytochrome bc1 complex cytochrome c subunit | polymer | 278 | 29109.9 | 2 | UniProt (A0R050) Pfam (PF00034) Pfam (PF13442) In PDB | Mycolicibacterium smegmatis | |
2 | M, G | Cytochrome bc1 complex cytochrome c subunit | polymer | 408 | 44869.4 | 2 | UniProt (A0R051) Pfam (PF19297) Pfam (PF00355) In PDB | Mycolicibacterium smegmatis | |
3 | N, H | Cytochrome bc1 complex cytochrome b subunit | polymer | 556 | 61514.3 | 2 | UniProt (A0R052) Pfam (PF13631) In PDB | Mycolicibacterium smegmatis | Cytochrome bc1 reductase complex subunit QcrB |
4 | P, I | Transmembrane protein | polymer | 100 | 11329.9 | 2 | UniProt (A0QVH4) Pfam (PF10939) In PDB | Mycolicibacterium smegmatis | |
5 | S, J | Probable cytochrome c oxidase subunit 3 | polymer | 203 | 22196.9 | 2 | UniProt (A0R049) Pfam (PF00510) In PDB | Mycolicibacterium smegmatis | Cytochrome aa3 subunit 3 |
6 | T, K | Cytochrome c oxidase polypeptide 4 | polymer | 139 | 15177.4 | 2 | UniProt (A0R056) Pfam (PF12270) In PDB | Mycolicibacterium smegmatis | Cytochrome aa3 subunit 4,Cytochrome c oxidase polypeptide IV |
7 | R, L | Cytochrome c oxidase subunit 1 | polymer | 575 | 64163.0 | 2 | UniProt (A0A2U9PNL2) Pfam (PF00115) In PDB | Mycolicibacterium smegmatis | |
8 | Q, X | cytochrome-c oxidase | polymer | 341 | 38077.5 | 2 | UniProt (A0R057) Pfam (PF00116) In PDB | Mycolicibacterium smegmatis | Cytochrome aa3 subunit 2 |
9 | U, Z | Cytochrome c oxidase subunit | polymer | 79 | 8365.5 | 2 | UniProt (A0R1B6) In PDB | Mycolicibacterium smegmatis | |
10 | V, a | Uncharacterized protein MSMEG_4692/MSMEI_4575 | polymer | 157 | 15911.0 | 2 | UniProt (A0R1B5) Pfam (PF17174) In PDB | Mycolicibacterium smegmatis | |
11 | W, b | LpqE protein | polymer | 186 | 19119.0 | 2 | UniProt (A0R562) In PDB | Mycolicibacterium smegmatis | |
12 | Y, c | Superoxide dismutase [Cu-Zn] | polymer | 236 | 23232.4 | 2 | UniProt (A0QQQ1) Pfam (PF00080) In PDB | Mycolicibacterium smegmatis | |
13 | C, O | HEME C | non-polymer | 618.5 | 4 | Chemie (HEC) | |||
14 | O, H, M, N, K... | MENAQUINONE-9 | non-polymer | 785.2 | 12 | Chemie (MQ9) | |||
15 | O, I, P, C | acyl-phosphatidyl-myo-inositol dimannoside (AcPIM2) | non-polymer | 1415.8 | 4 | Chemie (WUO) | |||
16 | M, G | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 2 | Chemie (FES) | |||
17 | M, G | [(2~{R})-3-[[(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(undecanoyloxymethyl)oxan-2-yl]oxy-cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{R})-10-methyldodecanoate | non-polymer | 1677.8 | 2 | Chemie (IZL) | |||
18 | b, M, W, G | (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate | non-polymer | 853.1 | 4 | Chemie (9YF) | |||
19 | M, N, S, G, H | (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate | non-polymer | 564.7 | 5 | Chemie (7PH) | |||
20 | H, N | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 4 | Chemie (HEM) | |||
21 | H, R, N, I, J... | CARDIOLIPIN | non-polymer | 1464.0 | 15 | Chemie (CDL) | |||
22 | X, R, Q, J, K... | TRIDECANE | non-polymer | 184.4 | 10 | Chemie (TRD) | |||
23 | J, S | 1,2-Distearoyl-sn-glycerophosphoethanolamine | non-polymer | 748.1 | 2 | Chemie (3PE) | |||
24 | R, L | HEME-A | non-polymer | 852.8 | 4 | Chemie (HEA) | |||
25 | R, Q, L, X | COPPER (II) ION | non-polymer | 63.5 | 6 | Chemie (CU) | |||
26 | R, L | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
27 | R, L | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
28 | b, c, W, Y | (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate | non-polymer | 595.0 | 4 | Chemie (9XX) | |||
29 | b, c, W, Y | PALMITIC ACID | non-polymer | 256.4 | 4 | Chemie (PLM) | |||
30 | water | water | 18.0 | 614 | Chemie (HOH) |
Sequence modifications
O, C: 27 - 294 (UniProt: A0R050)
N, H: 1 - 546 (UniProt: A0R052)
P, I: 18 - 100 (UniProt: A0QVH4)
R, L: 21 - 575 (UniProt: A0A2U9PNL2)
PDB | External Database | Details |
---|---|---|
Met 17 | - | initiating methionine |
His 18 | - | expression tag |
His 19 | - | expression tag |
His 20 | - | expression tag |
His 21 | - | expression tag |
His 22 | - | expression tag |
His 23 | - | expression tag |
Met 24 | - | expression tag |
Gly 25 | - | expression tag |
Ser 26 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Lys 547 | - | expression tag |
Leu 548 | - | expression tag |
Asp 549 | - | expression tag |
Tyr 550 | - | expression tag |
Lys 551 | - | expression tag |
Asp 552 | - | expression tag |
Asp 553 | - | expression tag |
Asp 554 | - | expression tag |
Asp 555 | - | expression tag |
Lys 556 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met 1 | - | initiating methionine |
Ser 2 | - | expression tag |
Ser 3 | - | expression tag |
Thr 4 | - | expression tag |
Gln 5 | - | expression tag |
Asp 6 | - | expression tag |
Arg 7 | - | expression tag |
Ser 8 | - | expression tag |
Gln 9 | - | expression tag |
Leu 10 | - | expression tag |
Asp 11 | - | expression tag |
Pro 12 | - | expression tag |
Glu 13 | - | expression tag |
Glu 14 | - | expression tag |
Gln 15 | - | expression tag |
Pro 16 | - | expression tag |
Val 17 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met 1 | - | initiating methionine |
Val 2 | - | expression tag |
Ala 3 | - | expression tag |
Glu 4 | - | expression tag |
Ala 5 | - | expression tag |
Pro 6 | - | expression tag |
Pro 7 | - | expression tag |
Ile 8 | - | expression tag |
Gly 9 | - | expression tag |
Glu 10 | - | expression tag |
Leu 11 | - | expression tag |
Glu 12 | - | expression tag |
Ala 13 | - | expression tag |
Arg 14 | - | expression tag |
Arg 15 | - | expression tag |
Pro 16 | - | expression tag |
Phe 17 | - | expression tag |
Pro 18 | - | expression tag |
Glu 19 | - | expression tag |
Arg 20 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 24 |
Total formula weight | 706132.3 | |
Non-Polymers* | Number of molecules | 86 |
Total formula weight | 62596.7 | |
All* | Total formula weight | 768729.0 |