8OTZ
48-nm repeat of the native axonemal doublet microtubule from bovine sperm
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, KS (0, V) | Cilia- and flagella-associated protein 95 | polymer | 232 | 26661.0 | 2 | UniProt (Q32L77) Pfam (PF15139) | Bos taurus (cattle) | |
| 2 | AF, B, C, CF, D... (0A, 0C, 0E, 0G, 0W...) | Sperm acrosome associated 9 | polymer | 224 | 25174.8 | 29 | UniProt (A0A3Q1MYU9) Pfam (PF15120) | Bos taurus (cattle) | |
| 3 | AV, N, O (1, 2, x) | Testis specific serine kinase 6 | polymer | 273 | 30256.9 | 3 | UniProt (F1N2S7) Pfam (PF00069) | Bos taurus (cattle) | |
| 4 | BV, CV, P (3, y, z) | EF-hand domain-containing protein | polymer | 275 | 31349.9 | 3 | UniProt (G5E5A3) | Bos taurus (cattle) | |
| 5 | OB, Q, VD (A, B, C) | ATP6V1F neighbor | polymer | 176 | 20279.7 | 3 | UniProt (G3X8G1) Pfam (PF22589) | Bos taurus (cattle) | |
| 6 | MC, R (A0, BN) | Outer dense fiber of sperm tails 3 like 1 | polymer | 274 | 30860.9 | 2 | Bos taurus (cattle) | ||
| 7 | AA, IB, JB, KB, MB... (A1, A2, A3, A4, A5...) | Outer dense fiber of sperm tails 3 | polymer | 254 | 27684.9 | 14 | UniProt (G3X6A7) | Bos taurus (cattle) | |
| 8 | AH, AQ, AR, AS, AT... (AA, AC, AE, AG, AI...) | Tubulin alpha-3 chain | polymer | 450 | 49978.3 | 149 | UniProt (Q32KN8) Pfam (PF00091) Pfam (PF03953) | Bos taurus (cattle) | Alpha-tubulin 3 |
| 9 | AC, AK, AL, AM, AO... (AB, AD, AF, AH, AJ...) | Tubulin beta-4B chain | polymer | 445 | 49877.8 | 153 | UniProt (Q3MHM5) Pfam (PF00091) Pfam (PF03953) | Bos taurus (cattle) | Tubulin beta-2C chain |
| 10 | OA, PA, QA, RA (AP, AQ, AR, AS) | Protein Flattop | polymer | 196 | 21214.0 | 4 | Bos taurus (cattle) | ||
| 11 | SA, TA (AT, AU) | Cilia- and flagella-associated protein 53 | polymer | 514 | 62139.0 | 2 | UniProt (F1N7G5) Pfam (PF13868) | Bos taurus (cattle) | |
| 12 | UA, VA (AV, AW) | Nucleoside diphosphate kinase 7 | polymer | 377 | 42650.9 | 2 | UniProt (Q5E9Y9) Pfam (PF25364) Pfam (PF00334) | Bos taurus (cattle) | NDK 7,NDP kinase 7 |
| 13 | WA, XA, YA, ZA (Aa, Ab, Ac, Ad) | EF-hand domain-containing family member C2 | polymer | 733 | 85566.8 | 4 | UniProt (A0A3Q1N1R0) Pfam (PF06565) | Bos taurus (cattle) | |
| 14 | AB, AD, BB, BD, CB... (Al, Am, An, Ao, B7...) | Family with sequence similarity 166 member A | polymer | 320 | 36251.4 | 14 | UniProt (G3X6E2) Pfam (PF10629) | Bos taurus (cattle) | |
| 15 | EB, FB, GB (Ap, Aq, Ar) | Protein FAM166C | polymer | 201 | 23414.6 | 3 | UniProt (Q3SZR5) Pfam (PF10629) | Bos taurus (cattle) | |
| 16 | HB, LB (At, Ax) | Outer dense fiber of sperm tails 3B | polymer | 303 | 32579.9 | 2 | Bos taurus (cattle) | ||
| 17 | PB, QB, RB, SB, TB... (B0, B1, B2, B3, B4...) | Spermatid-specific manchette-related protein 1 | polymer | 304 | 35109.0 | 10 | UniProt (Q32KP0) Pfam (PF15181) | Bos taurus (cattle) | Ciliated bronchial epithelial protein 1 |
| 18 | TD, UB, UD, VB (B5, B6, By, Bz) | Enkurin | polymer | 259 | 30215.1 | 4 | UniProt (E1B836) Pfam (PF13864) | Bos taurus (cattle) | |
| 19 | NC, OC, PC, QC (BO, BP, BQ, BR) | Coiled-coil domain-containing protein 105 | polymer | 500 | 57747.8 | 4 | UniProt (Q2YDN4) Pfam (PF03148) | Bos taurus (cattle) | |
| 20 | RC, SC (BS, BT) | Protein phosphatase 1 regulatory subunit 32 | polymer | 428 | 47818.1 | 2 | UniProt (Q2T9T0) Pfam (PF15691) | Bos taurus (cattle) | |
| 21 | HD, ID, JD, TC, UC (BU, BV, Bi, Bj, Bk) | RIB43A-like with coiled-coils protein 2 | polymer | 377 | 44773.4 | 5 | UniProt (Q32LJ7) Pfam (PF05914) | Bos taurus (cattle) | |
| 22 | VC, WC (BW, BX) | Cilia- and flagella-associated protein 107 | polymer | 196 | 23271.5 | 2 | UniProt (Q2TA11) Pfam (PF22595) | Bos taurus (cattle) | |
| 23 | ED, FD (Bf, Bg) | Piercer of microtubule wall 1 protein | polymer | 136 | 15673.5 | 2 | UniProt (Q32P67) Pfam (PF14892) | Bos taurus (cattle) | Pierce1,UPF0691 protein C9orf116 homolog |
| 24 | GD (Bh) | Piercer of microtubule wall 2 protein | polymer | 120 | 13784.5 | 1 | UniProt (A0A3Q1LFK7) Pfam (PF14892) | Bos taurus (cattle) | |
| 25 | KD, LD, MD, ND, OD (Bl, Bm, Bn, Bo, Bp) | Stabilizer of axonemal microtubules 1 | polymer | 477 | 40613.1 | 5 | Bos taurus (cattle) | ||
| 26 | PD, SD (Bq, Bu) | Stabilizer of axonemal microtubules 3 | polymer | 338 | 37465.4 | 2 | Bos taurus (cattle) | ||
| 27 | QD, RD (Br, Bs) | Meiosis-specific nuclear structural protein 1 | polymer | 495 | 60538.4 | 2 | UniProt (Q2KIQ2) Pfam (PF13868) | Bos taurus (cattle) | |
| 28 | AE, BE, CE, DE, EE... (C0, C2, C3, C4, C5...) | Tektin-3 | polymer | 490 | 56760.9 | 15 | UniProt (A6H782) Pfam (PF03148) | Bos taurus (cattle) | |
| 29 | AJ, EG, FH, GG, GH... (C1, Cz, D0, D1, D2...) | Tektin-5 | polymer | 489 | 56564.8 | 26 | UniProt (Q2YDI7) Pfam (PF03148) | Bos taurus (cattle) | |
| 30 | BF (CW) | Sperm-associated antigen 8 | polymer | 484 | 51604.4 | 1 | UniProt (E1BNS6) Pfam (PF22584) | Bos taurus (cattle) | |
| 31 | QF (Cl) | Spermatogenesis-associated protein 48 | polymer | 440 | 49735.2 | 1 | Bos taurus (cattle) | ||
| 32 | RF, SF, TF, UF (Cm, Cn, Co, Cp) | Tektin-1 | polymer | 418 | 48798.4 | 4 | UniProt (Q32KZ9) Pfam (PF03148) | Bos taurus (cattle) | |
| 33 | AG, BG, CG, DG, VF... (Cq, Cr, Cs, Ct, Cu...) | Tektin-2 | polymer | 430 | 49962.7 | 9 | UniProt (Q2T9Q6) Pfam (PF03148) | Bos taurus (cattle) | |
| 34 | FG (D) | Uncharacterized protein C1orf100 homolog | polymer | 138 | 16642.1 | 1 | UniProt (Q32L72) Pfam (PF17670) | Bos taurus (cattle) | |
| 35 | JJ, OH, PH, QH (DY, DZ, Da, Ee) | TEPP protein | polymer | 216 | 24939.4 | 4 | UniProt (C9QNT9) Pfam (PF22574) UniProt (by SIFTS) (Q2YDM5) | Bos taurus (cattle) | Testis,prostate and placenta expressed |
| 36 | RH, SH, TH (Db, Dc, Dd) | Uncharacterized protein MGC137036 | polymer | 192 | 21238.1 | 3 | UniProt (A0A3Q1LFG5) Pfam (PF22581) | Bos taurus (cattle) | |
| 37 | UH (De) | Testis expressed 33 | polymer | 272 | 30322.6 | 1 | UniProt (Q32LI7) Pfam (PF15400) | Bos taurus (cattle) | Uncharacterized protein MGC133880 |
| 38 | VH, WH, XH (Df, Dg, Dh) | Testis-expressed sequence 37 protein | polymer | 180 | 20375.1 | 3 | UniProt (A5PJD8) Pfam (PF15217) | Bos taurus (cattle) | |
| 39 | AI, BI, YH, ZH (Di, Dj, Dk, Dl) | Testis-expressed protein 43 | polymer | 133 | 15209.7 | 4 | UniProt (A8SMG2) Pfam (PF14983) | Bos taurus (cattle) | |
| 40 | CI (Dm) | Testis expressed 49 | polymer | 131 | 15441.4 | 1 | UniProt (A0A3Q1MT14) Pfam (PF22593) | Bos taurus (cattle) | |
| 41 | DI (Dn) | Theg spermatid protein like | polymer | 450 | 50941.5 | 1 | UniProt (A0A3Q1MNS9) Pfam (PF14912) | Bos taurus (cattle) | |
| 42 | EI, KJ (E, F) | EF-hand domain-containing family member B | polymer | 877 | 97960.5 | 2 | UniProt (F1MMV1) Pfam (PF13499) Pfam (PF25325) | Bos taurus (cattle) | Cilia- and flagella-associated protein 21 |
| 43 | FI, GI, HI, II (E1, E2, E3, E4) | Tektin bundle interacting protein 1 | polymer | 208 | 24559.5 | 4 | UniProt (F1MZJ1) Pfam (PF15041) | Bos taurus (cattle) | |
| 44 | BJ, CJ, DJ, EJ, FJ... (ES, ET, EU, EV, EW...) | Tektin-4 | polymer | 447 | 52025.5 | 8 | UniProt (Q2TA38) Pfam (PF03148) | Bos taurus (cattle) | |
| 45 | DK (G) | Chromosome 7 open reading frame 31 | polymer | 584 | 67685.6 | 1 | Bos taurus (cattle) | ||
| 46 | RK, RU (H, o) | Cilia- and flagella- associated protein 210 | polymer | 547 | 65437.6 | 2 | UniProt (E1BJL9) Pfam (PF13868) | Bos taurus (cattle) | |
| 47 | GL, MT, UT (I, X, Y) | EF-hand domain-containing protein 1 | polymer | 640 | 74125.3 | 3 | UniProt (E1BKH1) Pfam (PF06565) | Bos taurus (cattle) | Myoclonin-1 |
| 48 | JM, PN, VL, ZM (J, K, L, M) | Uncharacterized protein C10orf82 homolog | polymer | 235 | 26677.0 | 4 | UniProt (A6QPC0) Pfam (PF22573) | Bos taurus (cattle) | |
| 49 | KM (K1) | Cilia- and flagella-associated protein 144 | polymer | 135 | 16178.3 | 1 | UniProt (A8QW39) Pfam (PF14886) | Bos taurus (cattle) | Protein FAM183A |
| 50 | AN, BN (L1, L2) | Chromosome 20 C5orf49 homolog | polymer | 147 | 16820.8 | 2 | UniProt (A0A3Q1LU45) Pfam (PF15074) | Bos taurus (cattle) | |
| 51 | DO, RO (N, O) | Chromosome 19 C17orf98 homolog | polymer | 154 | 17813.2 | 2 | UniProt (E1BC62) Pfam (PF15075) | Bos taurus (cattle) | |
| 52 | FP (P) | Chromosome 13 C20orf85 homolog | polymer | 137 | 15810.2 | 1 | UniProt (A0A3S5ZPE5) Pfam (PF14945) | Bos taurus (cattle) | |
| 53 | TP (Q) | Cilia- and flagella-associated protein 68 | polymer | 169 | 20163.3 | 1 | UniProt (Q2T9Q3) Pfam (PF06608) | Bos taurus (cattle) | |
| 54 | HQ, JR, VQ, WR (R, S, T, U) | Cilia and flagella associated protein 77 | polymer | 284 | 32999.2 | 4 | UniProt (A0A3Q1LJD6) Pfam (PF14825) | Bos taurus (cattle) | |
| 55 | YS (W) | UPF0602 protein C4orf47 homolog | polymer | 309 | 34554.4 | 1 | UniProt (Q2T9M0) Pfam (PF15239) | Bos taurus (cattle) | |
| 56 | NT, OT, PT, QT, RT... (XG, XH, XI, XJ, XK...) | Cilia- and flagella-associated protein 20 | polymer | 193 | 22781.4 | 7 | UniProt (Q6B857) Pfam (PF05018) | Bos taurus (cattle) | |
| 57 | AU, VT, WT, XT, YT... (YG, YH, YI, YJ, YK...) | Parkin coregulated gene protein | polymer | 257 | 29323.1 | 6 | UniProt (A5PK71) Pfam (PF10274) | Bos taurus (cattle) | |
| 58 | BU, SU, TU (Z, p, q) | CFAP97 domain containing 1 | polymer | 164 | 19600.4 | 3 | UniProt (G3N1Q7) Pfam (PF13879) | Bos taurus (cattle) | |
| 59 | CU, DU, EU, FU (a, b, c, d) | Cilia- and flagella-associated protein 45 | polymer | 549 | 65800.3 | 4 | UniProt (Q32LN4) Pfam (PF13868) | Bos taurus (cattle) | |
| 60 | GU, HU, IU (e, f, g) | Cilia- and flagella-associated protein 52 | polymer | 623 | 68719.6 | 3 | UniProt (E1BKF9) Pfam (PF23409) Pfam (PF00400) | Bos taurus (cattle) | |
| 61 | JU (h) | Cilia- and flagella-associated protein 141 | polymer | 101 | 12361.4 | 1 | UniProt (Q32L75) Pfam (PF15104) | Bos taurus (cattle) | |
| 62 | KU, LU (i, j) | Cilia- and flagella-associated protein 161 | polymer | 321 | 36519.6 | 2 | UniProt (F6RJC2) Pfam (PF24569) | Bos taurus (cattle) | |
| 63 | MU, OU, PU, QU (k, l, m, n) | Dual specificity phosphatase 21 | polymer | 196 | 22075.6 | 4 | UniProt (Q0II40) Pfam (PF00782) | Bos taurus (cattle) | Similar to Dual specificity protein phosphatase 18 (Low molecular weight dual specificity phosphatase 20) |
| 64 | NU (ke) | Uncharacterized protein C4orf45 homolog | polymer | 197 | 22640.9 | 1 | UniProt (Q2KIR0) Pfam (PF15123) | Bos taurus (cattle) | |
| 65 | UU, VU, WU (r, s, t) | Cilia- and flagella-associated protein 276 | polymer | 170 | 19387.8 | 3 | UniProt (E1B9I5) Pfam (PF12494) | Bos taurus (cattle) | |
| 66 | XU, YU, ZU (u, v, w) | EF-hand calcium-binding domain-containing protein 3 | polymer | 438 | 50208.0 | 3 | UniProt (Q2T9P0) | Bos taurus (cattle) | |
| 67 | AHA, AKA, AMA, AW, AX... (PI, TI, WG, BC, CG...) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 149 | Chemie (GTP) | |||
| 68 | AAA, ACA, AEA, AIA, BMA... (GG, IO, LI, QM, WG...) | MAGNESIUM ION | non-polymer | 24.3 | 149 | Chemie (MG) | |||
| 69 | ABA, ADA, AFA, AGA, AJA... (HL, KF, MN, OD, SD...) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 153 | Chemie (GDP) |
Sequence modifications
C1, Cz, D0, D1, D2, D3, D4, D5, D6, D7, D8, D9, DP, DQ, DR, DS, DT, DU, DV, DW, DX, EA, EO, EP, EQ, ER: 1 - 489 (UniProt: Q2YDI7)
W: 1 - 309 (UniProt: Q2T9M0)
u, v, w: 1 - 438 (UniProt: Q2T9P0)
| PDB | External Database | Details |
|---|---|---|
| Asp 245 | Glu 245 | variant |
| PDB | External Database | Details |
|---|---|---|
| Pro 199 | Thr 199 | variant |
| PDB | External Database | Details |
|---|---|---|
| Ala 290 | Glu 290 | variant |
| Ser 303 | Thr 303 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 575 |
| Total formula weight | 25611019.3 | |
| Non-Polymers* | Number of molecules | 451 |
| Total formula weight | 149385.0 | |
| All* | Total formula weight | 25760404.3 |
