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8OSL

Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, EHistone H3.1polymer13915719.42UniProt (P68431)
Pfam (PF00125)
In PDB
Homo sapiens (human)Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l
2B, FHistone H4polymer10611676.72UniProt (P62805)
Pfam (PF15511)
In PDB
Homo sapiens (human)
3C, GHistone H2A type 1-B/Epolymer13314447.82UniProt (P04908)
Pfam (PF00125)
Pfam (PF16211)
In PDB
Homo sapiens (human)Histone H2A.2,Histone H2A/a,Histone H2A/m
4D, HHistone H2B type 1-Jpolymer12814088.32UniProt (P06899)
Pfam (PF00125)
In PDB
Homo sapiens (human)Histone H2B.1,Histone H2B.r,H2B/r
5IDNA (147-MER)polymer14745051.61Homo sapiens
6JDNA (147-MER)polymer14745698.21Homo sapiens
7M, OCircadian locomoter output cycles protein kaputpolymer37543768.42UniProt (O08785)
Pfam (PF00010)
Pfam (PF00989)
Pfam (PF14598)
In PDB
Mus musculus (house mouse)mCLOCK
8N, PBasic helix-loop-helix ARNT-like protein 1polymer38443821.22UniProt (Q9WTL8)
Pfam (PF00989)
Pfam (PF14598)
Pfam (PF00010)
In PDB
Mus musculus (house mouse)Arnt3,Aryl hydrocarbon receptor nuclear translocator-like protein 1,Brain and muscle ARNT-like 1
Sequence modifications
A, E: 0 - 135 (UniProt: P68431)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
B, F: 0 - 102 (UniProt: P62805)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
C, G: 0 - 129 (UniProt: P04908)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
D, H: 0 - 124 (UniProt: P06899)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
M, O: 26 - 395 (UniProt: O08785)
PDBExternal DatabaseDetails
Gly 21-expression tag
Ala 22-expression tag
Met 23-expression tag
Asn 24-expression tag
Pro 25-expression tag
N, P: 69 - 447 (UniProt: Q9WTL8)
PDBExternal DatabaseDetails
Gly 64-expression tag
Ala 65-expression tag
Met 66-expression tag
Asn 67-expression tag
Pro 68-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains14
Total formula weight377793.6
All*Total formula weight377793.6
*Water molecules are not included.

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PDB entries from 2024-10-16

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