Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8OJ8

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11Protein transport protein Sec61 subunit alpha isoform 1polymer47652295.41UniProt (P38377)
Pfam (PF10559)
Pfam (PF00344)
In PDB		Homo sapiens (human)Sec61 alpha-1
22Protein transport protein Sec61 subunit gammapolymer687752.31UniProt (P60059)
Pfam (PF00584)
In PDB		Homo sapiens (human)
33Protein transport protein Sec61 subunit betapolymer969987.51UniProt (P60468)
Pfam (PF03911)
In PDB		Homo sapiens (human)
4528S rRNApolymer50701640166.91Homo sapiens
575S rRNApolymer12138998.11GenBank (23898)Homo sapiens (human)
685.8S rRNApolymer15750449.81GenBank (555853)Homo sapiens (human)
7AE3 UFM1-protein ligase 1polymer79489722.21UniProt (O94874)
Pfam (PF09743)
In PDB		Homo sapiens (human)E3 UFM1-protein transferase 1,Multiple alpha-helix protein located at ER,Novel LZAP-binding protein,Regulator of C53/LZAP and DDRGK1
8KEukaryotic translation initiation factor 6polymer24526620.01UniProt (P56537)
Pfam (PF01912)
In PDB		Homo sapiens (human)eIF-6,B(2)GCN homolog,B4 integrin interactor,CAB,p27(BBP)
9LA60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL2
10LB60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
In PDB		Homo sapiens (human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
11LC60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Homo sapiens (human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
12LD60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL18
13LE60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
14LF60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL30
15LG60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
16LH60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL6
17LIRibosomal protein uL16-likepolymer21424552.91UniProt (Q96L21)
Pfam (PF00252)
In PDB		Homo sapiens (human)60S ribosomal protein L10-like,Large ribosomal subunit protein uL16-like
18LJ60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Homo sapiens (human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
19LL60S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
In PDB		Homo sapiens (human)Breast basic conserved protein 1,Large ribosomal subunit protein eL13
20LM60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
In PDB		Homo sapiens (human)CAG-ISL 7,Large ribosomal subunit protein eL14
21LN60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL15
22LO60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
In PDB		Homo sapiens (human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
23LP60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
In PDB		Homo sapiens (human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
24LQ60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL18
25LR60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL19
26LS60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL20
27LT60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL21
28LU60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
In PDB		Homo sapiens (human)EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15,Large ribosomal subunit protein eL22
29LV60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
In PDB		Homo sapiens (human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
30LW60S ribosomal protein L24polymer15717825.11UniProt (P83731)
Pfam (PF01246)
In PDB		Homo sapiens (human)60S ribosomal protein L30,Large ribosomal subunit protein eL24
31LX60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL23
32LY60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL24
33LZ60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL27
34La60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL15
35Lb60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
In PDB		Homo sapiens (human)Cell surface heparin-binding protein HIP,Large ribosomal subunit protein eL29
36Lc60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL30
37Ld60S ribosomal protein L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL31
38Le60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL32
39Lf60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
In PDB		Homo sapiens (human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
40Lg60S ribosomal protein L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL34
41Lh60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL29
42Li60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL36
43Lj60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
In PDB		Homo sapiens (human)G1.16,Large ribosomal subunit protein eL37
44Lk60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL38
45Ll60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL39
46LmUbiquitin-60S ribosomal protein L40polymer12814758.41UniProt (P62987)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Homo sapiens (human)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
47Lo60S ribosomal protein L36apolymer10612477.01UniProt (P83881)
Pfam (PF00935)
In PDB		Homo sapiens (human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
48Lp60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL43
49Lr60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL28
50Lz60S ribosomal protein L10apolymer21724879.41UniProt (P62906)
Pfam (PF00687)
In PDB		Homo sapiens (human)CSA-19,Large ribosomal subunit protein uL1,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6
515, 8, LA, LI, LP...MAGNESIUM IONnon-polymer24.3220Chemie (MG)
52Lg, Lj, Lm, Lo, LpZINC IONnon-polymer65.45Chemie (ZN)
Sequence modifications
1: 1 - 476 (UniProt: P38377)
PDBExternal DatabaseDetails
Ser 145Ala 145conflict
LI: 1 - 214 (UniProt: Q96L21)
PDBExternal DatabaseDetails
Ile 87Met 87conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains50
Total formula weight2765927.9
Non-Polymers*Number of molecules225
Total formula weight5674.1
All*Total formula weight2771602.1
*Water molecules are not included.

219515

PDB entries from 2024-05-08

PDB statisticsPDBj update infoContact PDBjnumon