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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8OJ0

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11Protein transport protein Sec61 subunit alpha isoform 1polymer47652279.41UniProt (P38377)
Pfam (PF10559)
Pfam (PF00344)
In PDB		Homo sapiens (human)Sec61 alpha-1
22Protein transport protein Sec61 subunit gammapolymer687752.31UniProt (P60059)
Pfam (PF00584)
In PDB		Homo sapiens (human)
33Protein transport protein Sec61 subunit betapolymer969987.51UniProt (P60468)
Pfam (PF03911)
In PDB		Homo sapiens (human)
4528S rRNApolymer50701640166.91Homo sapiens (human)
575S rRNApolymer12138998.11GenBank (23898)Homo sapiens (human)
685.8S rRNApolymer15750449.81GenBank (555853)Homo sapiens (human)
7AE3 UFM1-protein ligase 1polymer79489722.21UniProt (O94874)
Pfam (PF09743)
In PDB		Homo sapiens (human)E3 UFM1-protein transferase 1,Multiple alpha-helix protein located at ER,Novel LZAP-binding protein,Regulator of C53/LZAP and DDRGK1
8BCDK5 regulatory subunit-associated protein 3polymer50656977.41UniProt (Q96JB5)
Pfam (PF05600)
In PDB		Homo sapiens (human)CDK5 activator-binding protein C53,LXXLL/leucine-zipper-containing ARF-binding protein,Protein HSF-27
9CDDRGK domain-containing protein 1polymer31435663.81UniProt (Q96HY6)
Pfam (PF09756)
In PDB		Homo sapiens (human)Dashurin,UFM1-binding and PCI domain-containing protein 1
10DUbiquitin-fold modifier 1polymer859128.61UniProt (P61960)
Pfam (PF03671)
In PDB		Homo sapiens (human)
11KEukaryotic translation initiation factor 6polymer24526620.01UniProt (P56537)
Pfam (PF01912)
In PDB		Homo sapiens (human)eIF-6,B(2)GCN homolog,B4 integrin interactor,CAB,p27(BBP)
12LA60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL2
13LB60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
In PDB		Homo sapiens (human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
14LC60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Homo sapiens (human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
15LD60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL18
16LE60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
17LF60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL30
18LG60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
19LH60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL6
20LIRibosomal protein uL16-likepolymer21424552.91UniProt (Q96L21)
Pfam (PF00252)
In PDB		Homo sapiens (human)60S ribosomal protein L10-like,Large ribosomal subunit protein uL16-like
21LJ60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Homo sapiens (human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
22LL60S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
In PDB		Homo sapiens (human)Breast basic conserved protein 1,Large ribosomal subunit protein eL13
23LM60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
In PDB		Homo sapiens (human)CAG-ISL 7,Large ribosomal subunit protein eL14
24LN60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL15
25LO60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
In PDB		Homo sapiens (human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
26LP60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
In PDB		Homo sapiens (human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
27LQ60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL18
28LR60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL19
29LS60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL20
30LT60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL21
31LU60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
In PDB		Homo sapiens (human)EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15,Large ribosomal subunit protein eL22
32LV60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
In PDB		Homo sapiens (human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
33LW60S ribosomal protein L24polymer15717825.11UniProt (P83731)
Pfam (PF01246)
In PDB		Homo sapiens (human)60S ribosomal protein L30,Large ribosomal subunit protein eL24
34LX60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL23
35LY60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL24
36LZ60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL27
37La60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL15
38Lb60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
In PDB		Homo sapiens (human)Cell surface heparin-binding protein HIP,Large ribosomal subunit protein eL29
39Lc60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL30
40Ld60S ribosomal protein L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL31
41Le60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL32
42Lf60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
In PDB		Homo sapiens (human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
43Lg60S ribosomal protein L34polymer11713326.11UniProt (A0A6J3FY29)
Pfam (PF01199)
In PDB		Homo sapiens environmental sample
44Lh60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
In PDB		Homo sapiens (human)Large ribosomal subunit protein uL29
45Li60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL36
46Lj60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
In PDB		Homo sapiens (human)G1.16,Large ribosomal subunit protein eL37
47Lk60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL38
48Ll60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL39
49LmUbiquitin-60S ribosomal protein L40polymer12814758.41UniProt (P62987)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Homo sapiens (human)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
50Lo60S ribosomal protein L36apolymer10612477.01UniProt (P83881)
Pfam (PF00935)
In PDB		Homo sapiens (human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
51Lp60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL43
52Lr60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
In PDB		Homo sapiens (human)Large ribosomal subunit protein eL28
53Lz60S ribosomal protein L10apolymer21724879.41UniProt (P62906)
Pfam (PF00687)
In PDB		Homo sapiens (human)CSA-19,Large ribosomal subunit protein uL1,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6
545, 7, 8, LI, LP...MAGNESIUM IONnon-polymer24.3220Chemie (MG)
55Lg, Lj, Lm, Lo, LpZINC IONnon-polymer65.45Chemie (ZN)
Sequence modifications
LI: 1 - 214 (UniProt: Q96L21)
PDBExternal DatabaseDetails
Ile 87Met 87conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains53
Total formula weight2867681.7
Non-Polymers*Number of molecules225
Total formula weight5674.1
All*Total formula weight2873355.8
*Water molecules are not included.

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PDB entries from 2024-07-24

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