8OIN
55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | B1, B2, B3, B4, B5... | Mitochondrial ribosomal protein L12 | polymer | 198 | 21269.0 | 6 | UniProt (A0A8D0VGD9) Pfam (PF16320) Pfam (PF00542) In PDB | Sus scrofa (pig) | |
| 2 | B7 | E-site tRNA | polymer | 3 | 894.6 | 1 | Sus scrofa | ||
| 3 | B8 | 16S rRNA | polymer | 1571 | 504908.2 | 1 | Sus scrofa | ||
| 4 | B9 | CP Phe-tRNA | polymer | 73 | 23516.2 | 1 | Sus scrofa | ||
| 5 | BA | Large ribosomal subunit protein uL22m | polymer | 210 | 24313.4 | 1 | UniProt (A0A4X1TXR4) Pfam (PF00237) In PDB | Sus scrofa (pig) | 39S ribosomal protein L22,mitochondrial |
| 6 | BB | 39S ribosomal protein L23, mitochondrial | polymer | 150 | 17685.2 | 1 | UniProt (A0A480JJI1) Pfam (PF00276) In PDB | Sus scrofa (pig) | |
| 7 | BC | uL24m | polymer | 216 | 24893.5 | 1 | UniProt (F1RHJ1) Pfam (PF00467) Pfam (PF17136) In PDB | Sus scrofa (pig) | |
| 8 | BD | 39S ribosomal protein L27, mitochondrial | polymer | 148 | 15943.7 | 1 | UniProt (A0A4X1U0F6) Pfam (PF01016) In PDB | Sus scrofa (pig) | Mitochondrial ribosomal protein L27 |
| 9 | BE | Mitochondrial ribosomal protein L28 | polymer | 256 | 30149.0 | 1 | UniProt (A0A286ZTW8) Pfam (PF00830) In PDB | Sus scrofa (pig) | |
| 10 | BF | Mitochondrial ribosomal protein L47 | polymer | 250 | 29894.9 | 1 | UniProt (F1SGC7) Pfam (PF06984) In PDB | Sus scrofa (pig) | |
| 11 | BG | Large ribosomal subunit protein uL30m | polymer | 161 | 18921.1 | 1 | UniProt (A0A8D0VJF4) Pfam (PF00327) In PDB | Sus scrofa (pig) | 39S ribosomal protein L30,mitochondrial |
| 12 | BH | Mitochondrial ribosomal protein L32 | polymer | 207 | 23567.2 | 1 | UniProt (I3LTC4) Pfam (PF01783) In PDB | Sus scrofa (pig) | |
| 13 | BI | Large ribosomal subunit protein bL33m | polymer | 65 | 7508.1 | 1 | UniProt (A0A4X1TLP9) Pfam (PF00471) In PDB | Sus scrofa (pig) | 39S ribosomal protein L33,mitochondrial |
| 14 | BJ | Large ribosomal subunit protein bL34m | polymer | 95 | 10871.7 | 1 | UniProt (A0A8D1JE64) Pfam (PF00468) In PDB | Sus scrofa (pig) | 39S ribosomal protein L34,mitochondrial |
| 15 | BK | 39S ribosomal protein L35, mitochondrial | polymer | 188 | 21548.5 | 1 | UniProt (A0A5G2QZK0) Pfam (PF01632) In PDB | Sus scrofa (pig) | |
| 16 | BL | Mitochondrial ribosomal protein L2 | polymer | 306 | 33270.9 | 1 | UniProt (A0A287A143) Pfam (PF00181) Pfam (PF03947) In PDB | Sus scrofa (pig) | |
| 17 | BM | ICT1 | polymer | 399 | 43708.3 | 1 | UniProt (A0A140UHW4) Pfam (PF00297) In PDB | Sus scrofa (pig) | Mitochondrial ribosomal protein L3 |
| 18 | BN | Mitochondrial ribosomal protein L4 | polymer | 294 | 33251.5 | 1 | UniProt (A0A287B9C4) Pfam (PF00573) In PDB | Sus scrofa (pig) | |
| 19 | BO | Mitochondrial ribosomal protein L9 | polymer | 268 | 30373.4 | 1 | UniProt (I3LR45) Pfam (PF01281) Pfam (PF22078) In PDB | Sus scrofa (pig) | |
| 20 | BP | Mitochondrial ribosomal protein L10 | polymer | 257 | 29238.3 | 1 | UniProt (F1RWJ0) Pfam (PF00466) In PDB | Sus scrofa (pig) | |
| 21 | BQ | Mitochondrial ribosomal protein L11 | polymer | 192 | 20809.3 | 1 | UniProt (F1RU54) Pfam (PF00298) In PDB | Sus scrofa (pig) | |
| 22 | BR | 39S ribosomal protein L13, mitochondrial | polymer | 197 | 22988.6 | 1 | UniProt (K7GP19) Pfam (PF00572) In PDB | Sus scrofa (pig) | Mitochondrial ribosomal protein L13 |
| 23 | BS | Mitochondrial ribosomal protein L14 | polymer | 325 | 34796.6 | 1 | UniProt (A0A287BMZ6) Pfam (PF00238) In PDB | Sus scrofa (pig) | |
| 24 | BT | 39S ribosomal protein L15, mitochondrial | polymer | 296 | 33481.7 | 1 | UniProt (A0A5G2RG26) Pfam (PF00828) UniProt (by SIFTS) (A0A8D0HMG9) In PDB | Sus scrofa (pig) | |
| 25 | BU | uL16m | polymer | 251 | 28680.5 | 1 | UniProt (F1RI89) Pfam (PF00252) In PDB | Sus scrofa (pig) | |
| 26 | BV | bL17m | polymer | 169 | 19268.2 | 1 | UniProt (F1RMQ4) Pfam (PF01196) In PDB | Sus scrofa (pig) | |
| 27 | BW | Mitochondrial ribosomal protein L18 | polymer | 188 | 21422.6 | 1 | UniProt (A0A4X1VX01) Pfam (PF00861) In PDB | Sus scrofa (pig) | |
| 28 | BX | 39S ribosomal protein L19, mitochondrial | polymer | 303 | 34528.8 | 1 | UniProt (I3LNJ0) Pfam (PF01245) In PDB | Sus scrofa (pig) | Mitochondrial ribosomal protein L19 |
| 29 | BY | Mitochondrial ribosomal protein L20 | polymer | 149 | 17554.8 | 1 | UniProt (A0A286ZU56) Pfam (PF00453) In PDB | Sus scrofa (pig) | |
| 30 | BZ | Mitochondrial ribosomal protein L21 | polymer | 209 | 23154.9 | 1 | UniProt (F1RY70) Pfam (PF00829) In PDB | Sus scrofa (pig) | |
| 31 | Ba | 39S ribosomal protein L52, mitochondrial | polymer | 160 | 17989.6 | 1 | UniProt (F1S9B7) Pfam (PF18699) In PDB | Sus scrofa (pig) | |
| 32 | Bb | Mitochondrial ribosomal protein L53 | polymer | 112 | 12057.8 | 1 | UniProt (A0A8D0LKT0) Pfam (PF10780) In PDB | Sus scrofa (pig) | |
| 33 | Bc | mL54 | polymer | 138 | 15957.4 | 1 | UniProt (I3LN63) Pfam (PF08561) In PDB | Sus scrofa (pig) | |
| 34 | Bd | Mitochondrial ribosomal protein L55 | polymer | 126 | 15156.5 | 1 | UniProt (A0A4X1ULI6) Pfam (PF09776) In PDB | Sus scrofa (pig) | |
| 35 | Be | Mitochondrial ribosomal protein L57 | polymer | 102 | 12001.9 | 1 | UniProt (A0A287BP93) Pfam (PF14978) In PDB | Sus scrofa (pig) | |
| 36 | Bf | mL62 (ICT1) | polymer | 205 | 23545.9 | 1 | UniProt (A0A286ZJR2) Pfam (PF00472) In PDB | Sus scrofa (pig) | |
| 37 | Bg | mL64 | polymer | 222 | 25815.0 | 1 | UniProt (A0A286ZXA6) Pfam (PF10147) In PDB | Sus scrofa (pig) | |
| 38 | Bh | Mitochondrial ribosomal protein S18A | polymer | 196 | 22273.1 | 1 | UniProt (F1RRH6) Pfam (PF01084) In PDB | Sus scrofa (pig) | |
| 39 | Bi | 39S ribosomal protein S30, mitochondrial | polymer | 433 | 49100.5 | 1 | UniProt (A0A480QIM3) Pfam (PF07147) In PDB | Sus scrofa (pig) | Mitochondrial ribosomal protein S30 |
| 40 | Bj | 39S ribosomal protein L1, mitochondrial | polymer | 304 | 34372.9 | 1 | UniProt (A0A287AF82) Pfam (PF00687) In PDB | Sus scrofa (pig) | |
| 41 | Bl | Ribosomal protein | polymer | 100 | 10841.0 | 1 | UniProt (A0A287A731) Pfam (PF00444) In PDB | Sus scrofa (pig) | |
| 42 | Bm | Mitochondrial ribosomal protein L37 | polymer | 423 | 47918.0 | 1 | UniProt (A0A287BIV6) Pfam (PF07147) In PDB | Sus scrofa (pig) | |
| 43 | Bn | Mitochondrial ribosomal protein L38 | polymer | 380 | 44656.4 | 1 | UniProt (F1RW03) Pfam (PF01161) In PDB | Sus scrofa (pig) | |
| 44 | Bo | Mitochondrial ribosomal protein L39 | polymer | 334 | 38523.4 | 1 | UniProt (F1SHP6) In PDB | Sus scrofa (pig) | |
| 45 | Bp | Mitochondrial ribosomal protein L40 | polymer | 162 | 19406.3 | 1 | UniProt (A0A286ZP98) Pfam (PF09812) In PDB | Sus scrofa (pig) | |
| 46 | Bq | 39S ribosomal protein L41, mitochondrial | polymer | 135 | 15073.4 | 1 | UniProt (A0A8D1BPA5) Pfam (PF09809) In PDB | Sus scrofa (pig) | |
| 47 | Br | mL42 | polymer | 142 | 16680.2 | 1 | UniProt (A0A287BQA1) Pfam (PF10210) In PDB | Sus scrofa (pig) | |
| 48 | Bs | Large ribosomal subunit protein mL43 | polymer | 159 | 17623.0 | 1 | UniProt (F1S8U4) Pfam (PF05047) In PDB | Sus scrofa (pig) | |
| 49 | Bt | mL44 | polymer | 332 | 37527.2 | 1 | UniProt (F1SR64) Pfam (PF22935) Pfam (PF22892) In PDB | Sus scrofa (pig) | |
| 50 | Bu | Mitochondrial ribosomal protein L45 | polymer | 306 | 35331.8 | 1 | UniProt (I3LGM5) Pfam (PF04280) In PDB | Sus scrofa (pig) | |
| 51 | Bv | Mitochondrial ribosomal protein L46 | polymer | 279 | 32216.0 | 1 | UniProt (F1SRT0) Pfam (PF11788) In PDB | Sus scrofa (pig) | |
| 52 | Bw | 39S ribosomal protein L48, mitochondrial | polymer | 269 | 29942.5 | 1 | UniProt (A0A480J9Z6) Pfam (PF00338) In PDB | Sus scrofa (pig) | 39S ribosomal protein L48,mitochondrial isoform 1,Mitochondrial ribosomal protein L48 |
| 53 | Bx | Mrpl34 | polymer | 166 | 18957.8 | 1 | UniProt (A0A0R4J8D6) Pfam (PF05046) In PDB | Sus scrofa (pig) | |
| 54 | By | Mitochondrial ribosomal protein L50 | polymer | 198 | 22785.4 | 1 | UniProt (I3L9H6) Pfam (PF10501) In PDB | Sus scrofa (pig) | |
| 55 | Bz | Large ribosomal subunit protein mL51 | polymer | 128 | 15249.0 | 1 | UniProt (A0A8D1VKN8) Pfam (PF10244) In PDB | Sus scrofa (pig) | 39S ribosomal protein L51,mitochondrial |
| 56 | AA | 12S rRNA | polymer | 960 | 308452.9 | 1 | Sus scrofa | ||
| 57 | AB | 28S ribosomal protein S35, mitochondrial isoform 1 | polymer | 366 | 41357.8 | 1 | UniProt (F1SG95) Pfam (PF10213) In PDB | Sus scrofa (pig) | Mitochondrial ribosomal protein S35 |
| 58 | AC | Mitochondrial ribosomal protein S24 | polymer | 167 | 18935.2 | 1 | UniProt (A0A287ANU4) Pfam (PF14955) In PDB | Sus scrofa (pig) | |
| 59 | AD | Small ribosomal subunit protein mS38 | polymer | 199 | 22843.9 | 1 | UniProt (A0A8D1P8R7) Pfam (PF08213) In PDB | Sus scrofa (pig) | |
| 60 | AE | Mitoribosomal protein bs6m, mrps6 | polymer | 124 | 14283.7 | 1 | UniProt (A0A5K1V0G5) Pfam (PF01250) In PDB | Sus scrofa (pig) | |
| 61 | AF | Mitochondrial ribosomal protein S7 | polymer | 242 | 28150.9 | 1 | UniProt (A0A286ZJ25) Pfam (PF00177) In PDB | Sus scrofa (pig) | |
| 62 | AG | P-site Met-tRNA(fMet) | polymer | 71 | 22664.5 | 1 | GenBank (1208989970) | Homo sapiens | |
| 63 | AH | Mitochondrial ribosomal protein S10 | polymer | 200 | 23105.7 | 1 | UniProt (F1RUU2) Pfam (PF00338) In PDB | Sus scrofa (pig) | |
| 64 | AI | mRNA | polymer | 9 | 2902.8 | 1 | Homo sapiens | ||
| 65 | AJ | Mitochondrial ribosomal protein S12 | polymer | 139 | 15257.1 | 1 | UniProt (A0A0M3KL52) Pfam (PF00164) In PDB | Sus scrofa (pig) | Mitoribosomal protein us12m,mrps12 |
| 66 | AK | Mitochondrial ribosomal protein S14 | polymer | 128 | 15120.7 | 1 | UniProt (A0A0M3KL53) Pfam (PF00253) In PDB | Sus scrofa (pig) | Mitoribosomal protein us14m,mrps14 |
| 67 | AL | 28S ribosomal protein S15, mitochondrial | polymer | 259 | 29596.9 | 1 | UniProt (A0A287AKS1) Pfam (PF00312) In PDB | Sus scrofa (pig) | |
| 68 | AM | 28S ribosomal protein S16, mitochondrial | polymer | 135 | 15182.7 | 1 | UniProt (A0A480JTD7) Pfam (PF00886) In PDB | Sus scrofa (pig) | Mitochondrial ribosomal protein S16 |
| 69 | AN | 28S ribosomal protein S17, mitochondrial | polymer | 130 | 14452.0 | 1 | UniProt (A0A8D1IXU1) Pfam (PF00366) In PDB | Sus scrofa (pig) | |
| 70 | AO | 28S ribosomal protein S18b, mitochondrial | polymer | 258 | 29220.5 | 1 | UniProt (Q767K8) Pfam (PF01084) In PDB | Sus scrofa (pig) | S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2 |
| 71 | AP | Mitochondrial ribosomal protein S18C | polymer | 143 | 16211.1 | 1 | UniProt (A0A0M3KL54) Pfam (PF01084) In PDB | Sus scrofa (pig) | Mitoribosomal protein bs18m,mrps18c |
| 72 | AQ | 28S ribosomal protein S21, mitochondrial | polymer | 87 | 10724.5 | 1 | UniProt (A0A286ZNB3) Pfam (PF01165) In PDB | Sus scrofa (pig) | |
| 73 | AR | Mitochondrial ribosomal protein S22 | polymer | 382 | 43234.6 | 1 | UniProt (A0A287AQT5) Pfam (PF10245) In PDB | Sus scrofa (pig) | |
| 74 | AS | mS23 | polymer | 190 | 21666.7 | 1 | UniProt (A0A287AEW3) Pfam (PF10484) In PDB | Sus scrofa (pig) | |
| 75 | AT | Mitochondrial ribosomal protein S25 | polymer | 173 | 19954.2 | 1 | UniProt (A0A0M3KL55) Pfam (PF05047) In PDB | Sus scrofa (pig) | Mitoribosomal protein ms25,mrps25 |
| 76 | AU | Mitochondrial ribosomal protein S26 | polymer | 205 | 23637.9 | 1 | UniProt (A0A287AY01) In PDB | Sus scrofa (pig) | |
| 77 | AV | Mitochondrial ribosomal protein S27 | polymer | 395 | 45761.8 | 1 | UniProt (A0A5G2R1I0) Pfam (PF10037) In PDB | Sus scrofa (pig) | |
| 78 | AW | Mitoribosomal protein ms28, mrps28 | polymer | 188 | 21014.9 | 1 | UniProt (A0A0M3KL56) Pfam (PF10246) In PDB | Sus scrofa (pig) | |
| 79 | AX | Small ribosomal subunit protein mS29 | polymer | 410 | 46966.1 | 1 | UniProt (A0A8D1XNL0) Pfam (PF10236) In PDB | Sus scrofa (pig) | |
| 80 | AY | 28S ribosomal protein S31, mitochondrial | polymer | 381 | 43516.5 | 1 | UniProt (F1RME2) Pfam (PF15433) In PDB | Sus scrofa (pig) | |
| 81 | AZ | Mitochondrial ribosomal protein S33 | polymer | 148 | 16971.7 | 1 | UniProt (F1S8G3) Pfam (PF08293) UniProt (by SIFTS) (A0A4X1V2H3) In PDB | Sus scrofa (pig) | |
| 82 | Aa | Peptide chain release factor 1, mitochondrial | polymer | 474 | 55569.7 | 1 | UniProt (O75570) Pfam (PF03462) Pfam (PF00472) In PDB | Homo sapiens (human) | MRF-1,MtRF-1 |
| 83 | Ab | Mitochondrial ribosomal protein S2 | polymer | 289 | 31731.6 | 1 | UniProt (F1S001) Pfam (PF00318) In PDB | Sus scrofa (pig) | |
| 84 | Ac | Coiled-coil-helix-coiled-coil-helix domain containing 1 | polymer | 118 | 13603.9 | 1 | UniProt (F1SU49) Pfam (PF06747) UniProt (by SIFTS) (A0A4X1SZV4) In PDB | Sus scrofa (pig) | |
| 85 | Ad | 28S ribosomal protein S5, mitochondrial isoform X2 | polymer | 430 | 48213.1 | 1 | UniProt (F1SU66) Pfam (PF21251) Pfam (PF00333) Pfam (PF03719) In PDB | Sus scrofa (pig) | Mitochondrial ribosomal protein S5 |
| 86 | Ae | mS39 | polymer | 692 | 78518.2 | 1 | UniProt (K7GKS8) Pfam (PF22330) Pfam (PF13812) In PDB | Sus scrofa (pig) | |
| 87 | Ag | uS9m | polymer | 397 | 45604.6 | 1 | UniProt (I3LU08) Pfam (PF00380) In PDB | Sus scrofa (pig) | |
| 88 | Ai | Mitochondrial ribosomal protein S11 | polymer | 196 | 20856.9 | 1 | UniProt (A0A286ZJJ6) Pfam (PF00411) In PDB | Sus scrofa (pig) | |
| 89 | Aj | Mitochondrial ribosomal protein S34 | polymer | 505 | 55714.4 | 1 | UniProt (A0A287AVS9) Pfam (PF16053) In PDB | Sus scrofa (pig) | |
| 90 | B8, B9, AA, AG, AI... | MAGNESIUM ION | non-polymer | 24.3 | 332 | Chemie (MG) | |||
| 91 | B8, BL, BU, BW, AA... | POTASSIUM ION | non-polymer | 39.1 | 41 | Chemie (K) | |||
| 92 | B9 | PHENYLALANINE | non-polymer | 165.2 | 1 | Chemie (PHE) | |||
| 93 | BH, AO, Bl | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 94 | AP, AT, Bh | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 3 | Chemie (FES) | |||
| 95 | AA | SPERMINE | non-polymer | 202.3 | 1 | Chemie (SPM) | |||
| 96 | AA | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) | |||
| 97 | AG | N-FORMYLMETHIONINE | non-polymer | 177.2 | 1 | Chemie (FME) | |||
| 98 | AX | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 99 | AX | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 100 | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
BU: 1 - 251 (UniProt: F1RI89)
Bs: 2 - 159 (UniProt: F1S8U4)
Bx: 1 - 166 (UniProt: A0A0R4J8D6)
AG: 1 - 68 (GenBank: 1208989970)
Aa: 1 - 445 (UniProt: O75570)
Ai: 1 - 196 (UniProt: A0A286ZJJ6)
| PDB | External Database | Details |
|---|---|---|
| His 237 | Tyr 237 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ace 2 | - | acetylation |
| PDB | External Database | Details |
|---|---|---|
| Arg 59 | Lys 59 | conflict |
| PDB | External Database | Details |
|---|---|---|
| C 69 | - | insertion |
| C 70 | - | insertion |
| A 71 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Gly 446 | - | expression tag |
| Gly 447 | - | expression tag |
| Ser 448 | - | expression tag |
| Gly 449 | - | expression tag |
| Gly 450 | - | expression tag |
| Ser 451 | - | expression tag |
| Gly 452 | - | expression tag |
| Asp 453 | - | expression tag |
| Tyr 454 | - | expression tag |
| Lys 455 | - | expression tag |
| Asp 456 | - | expression tag |
| His 457 | - | expression tag |
| Asp 458 | - | expression tag |
| Gly 459 | - | expression tag |
| Asp 460 | - | expression tag |
| Tyr 461 | - | expression tag |
| Lys 462 | - | expression tag |
| Asp 463 | - | expression tag |
| His 464 | - | expression tag |
| Asp 465 | - | expression tag |
| Ile 466 | - | expression tag |
| Asp 467 | - | expression tag |
| Tyr 468 | - | expression tag |
| Lys 469 | - | expression tag |
| Asp 470 | - | expression tag |
| Asp 471 | - | expression tag |
| Asp 472 | - | expression tag |
| Asp 473 | - | expression tag |
| Lys 474 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| 5f0 186 | Asn 186 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 94 |
| Total formula weight | 3200759.0 | |
| Non-Polymers* | Number of molecules | 385 |
| Total formula weight | 12036.3 | |
| All* | Total formula weight | 3212795.4 |
