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8K85

Crystal structure of Red Broccoli aptamer with OBI

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
RNA (56-MER)polymer5618171.72synthetic construct
2C, J
(A, B)
(5Z)-3-(3H-benzimidazol-4-ylmethyl)-5-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-2-[(E)-hydroxyiminomethyl]imidazol-4-onenon-polymer397.32Chemie (A1EBI)
3D
(A)
(4S)-2-METHYL-2,4-PENTANEDIOLnon-polymer118.21Chemie (MPD)
4E, F, G, H, K
(A, B)
POTASSIUM IONnon-polymer39.15Chemie (K)
5I, L
(A, B)
SODIUM IONnon-polymer23.02Chemie (NA)
6M
(B)
waterwater18.01Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight36343.5
Non-Polymers*Number of molecules10
Total formula weight1154.3
All*Total formula weight37497.8
*Water molecules are not included.

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PDB entries from 2026-03-18

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