8K5O
Cryo-EM structure of the RC-LH core comples from Halorhodospira halochloris
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C) | Photosynthetic reaction center cytochrome c subunit | polymer | 372 | 41612.9 | 1 | UniProt (A0A0X8X829) Pfam (PF02276) | Halorhodospira halochloris | |
| 2 | B (L) | Reaction center protein L chain | polymer | 279 | 31115.0 | 1 | UniProt (A0A0X8XAH6) Pfam (PF00124) | Halorhodospira halochloris | |
| 3 | C (M) | Reaction center protein M chain | polymer | 320 | 36221.7 | 1 | UniProt (A0A0X8X847) Pfam (PF00124) | Halorhodospira halochloris | |
| 4 | D (H) | Photosynthetic reaction center H subunit | polymer | 274 | 31293.8 | 1 | UniProt (A0A0X8X838) Pfam (PF03967) Pfam (PF05239) | Halorhodospira halochloris | |
| 5 | E (4) | Antenna complex alpha/beta subunit domain-containing protein | polymer | 105 | 12053.3 | 1 | UniProt (A0A110B4Z6) Pfam (PF00556) | Halorhodospira halochloris | |
| 6 | F (3) | Light-harvesting LHI | polymer | 65 | 7562.9 | 1 | UniProt (A0A120MZP7) Pfam (PF00556) | Halorhodospira halochloris | |
| 7 | BA, EA, G, HA, J... (w, Y, b, k, n...) | Antenna complex alpha/beta subunit domain-containing protein | polymer | 65 | 7696.8 | 16 | UniProt (A0A0X8XBE4) Pfam (PF00556) | Halorhodospira halochloris | |
| 8 | AB, CA, FA, H, IA... (x, Z, c, l, o...) | Beta subunit of light-harvesting 1 | polymer | 86 | 9555.7 | 16 | UniProt (A0A0X8X9B2) | Halorhodospira halochloris | |
| 9 | AA, BB, DA, GA, I... (v, X, a, j, m...) | Gamma subunit of light-harvesting 1 | polymer | 29 | 3123.8 | 16 | Halorhodospira halochloris | ||
| 10 | CB (2) | reaction center small polypeptide | polymer | 31 | 3531.3 | 1 | Halorhodospira halochloris | ||
| 11 | DB (9) | reactin center small polypeptide | polymer | 33 | 3762.5 | 1 | Halorhodospira halochloris | ||
| 12 | EB, FB, GB, HB (C) | HEME C | non-polymer | 618.5 | 4 | Chemie (HEC) | |||
| 13 | AF, BE, BH, CC, CD... (s, k, R, M, v...) | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE | non-polymer | 749.0 | 50 | Chemie (PGV) PubChem (21158857) PubChem (73746220) PubChem (5289145) PubChem (162368821) PubChem (163029036) | |||
| 14 | JB (C) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 1 | Chemie (LHG) PubChem (46936292) PubChem (65144) PubChem (73416066) PubChem (13305396) PubChem (446440) PubChem (9547104) PubChem (11846227) PubChem (138986743) | |||
| 15 | BF, CE, CF, CG, CH... (z, l, N, V, Y...) | Trans-Geranyl Bacteriochlorophyll B | non-polymer | 907.5 | 54 | Chemie (A1LZM) | |||
| 16 | OB, ZB (L, M) | Trans-Geranyl Bacteriopheophytin B | non-polymer | 885.2 | 2 | Chemie (A1LZP) | |||
| 17 | PB (L) | Ubiquinone-8 | non-polymer | 727.1 | 1 | Chemie (UQ8) PubChem (176478936) PubChem (5283546) PubChem (1157) | |||
| 18 | AD, AE, AG, AH, AI... (v, k, K, R, g...) | UNKNOWN LIGAND | non-polymer | 909.5 | 57 | Chemie (UNL) | |||
| 19 | WB (M) | FE (III) ION | non-polymer | 55.8 | 1 | Chemie (FE) PubChem (29936) | |||
| 20 | AC, BC (M) | MENAQUINONE 8 | non-polymer | 717.1 | 2 | Chemie (MQ8) PubChem (1184) PubChem (5288843) PubChem (5376507) PubChem (9875074) PubChem (163285555) | |||
| 21 | EC, FC, MC (M, H) | CARDIOLIPIN | non-polymer | 1464.0 | 3 | Chemie (CDL) PubChem (17753886) PubChem (5287898) | |||
| 22 | SC (3) | LYCOPENE | non-polymer | 536.9 | 1 | Chemie (LYC) PubChem (21145326) PubChem (25245411) PubChem (53477748) PubChem (53483360) PubChem (54603520) PubChem (56841918) PubChem (92863368) PubChem (101753434) PubChem (71773487) PubChem (3977) PubChem (446925) PubChem (92863365) PubChem (92863366) PubChem (92863367) PubChem (100972459) PubChem (101118616) PubChem (163826994) PubChem (101467043) PubChem (101753435) PubChem (101764620) PubChem (101764621) PubChem (101764622) PubChem (102062446) PubChem (102105948) PubChem (102407971) PubChem (123133982) PubChem (5319123) PubChem (5353730) PubChem (5385555) PubChem (6440310) PubChem (6440363) PubChem (6440364) PubChem (131954643) PubChem (135074778) PubChem (10918539) PubChem (10973519) PubChem (11124358) PubChem (11756979) PubChem (138394743) PubChem (152743366) PubChem (154495923) PubChem (157010101) PubChem (159936649) PubChem (161488819) PubChem (163826995) PubChem (168312947) PubChem (172779219) PubChem (172779220) PubChem (172779221) PubChem (172779222) PubChem (172878403) PubChem (172878665) | |||
| 23 | DE, DG, FF, GH, ID... (l, N, 1, W, Z...) | Trans-Geranyl 8-vinyl-bacteriochlorophyll B | non-polymer | 907.5 | 16 | Chemie (A1LZQ) | |||
| 24 | BG (K) | DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE | non-polymer | 692.0 | 1 | Chemie (PEF) PubChem (65109) PubChem (15859389) PubChem (445468) | |||
| 25 | VG, WH (S, h) | 2-O-octyl-beta-D-glucopyranose | non-polymer | 292.4 | 2 | Chemie (BGL) PubChem (21726865) PubChem (57506795) PubChem (66618075) PubChem (68624687) PubChem (68624855) PubChem (68625546) PubChem (69825209) PubChem (445463) PubChem (3471143) PubChem (156616836) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 493173.3 | |
| Non-Polymers* | Number of molecules | 195 |
| Total formula weight | 166204.4 | |
| All* | Total formula weight | 659377.7 |
