8JXA
cryo-EM structure of rat megalin bodyB
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | LDL receptor related protein 2 | polymer | 4660 | 519871.4 | 2 | UniProt (A0A0G2K9W7) Pfam (PF00057) Pfam (PF00058) Pfam (PF14670) Pfam (PF07645) Pfam (PF24468) Pfam (PF12662) UniProt (by SIFTS) (P98158) | Rattus norvegicus (Norway rat) | rat megalin |
| 2 | C (M) | unclear peptide | polymer | 5 | 472.5 | 1 | Rattus norvegicus | ||
| 3 | D, E (C, D) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G15407YE) | |||
| 4 | F, I, J (E, H, I) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
| 5 | G, H, K (F, G, J) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 6 | L (K) | beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G44266EX) | |||
| 7 | M, N (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 8 | O, P, Q, R, S (A) | 2-acetamido-2-deoxy-alpha-D-galactopyranose | non-polymer | 221.2 | 5 | Chemie (A2G) | |||
| 9 | AA, BA, CA, DA, EA... (A) | CALCIUM ION | non-polymer | 40.1 | 20 | Chemie (CA) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 1040215.4 | |
| Branched | Number of molecules | 9 |
| Total formula weight | 5765.3 | |
| Non-Polymers* | Number of molecules | 27 |
| Total formula weight | 2350.0 | |
| All* | Total formula weight | 1048330.7 |
