8JPN
Cryo-EM structure of succinate receptor bound to cis-epoxysuccinic acid coupling to Gi
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Guanine nucleotide-binding protein G(i) subunit alpha-1 | polymer | 354 | 40415.0 | 1 | UniProt (P63096) Pfam (PF00503) In PDB | Homo sapiens (human) | Adenylate cyclase-inhibiting G alpha protein |
2 | B | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | polymer | 377 | 41055.9 | 1 | UniProt (P62873) Pfam (PF00400) In PDB | Homo sapiens (human) | Transducin beta chain 1 |
3 | C | Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | polymer | 71 | 7861.1 | 1 | UniProt (P59768) Pfam (PF00631) In PDB | Homo sapiens (human) | G gamma-I |
4 | R | Soluble cytochrome b562,Succinate receptor 1,Oplophorus-luciferin 2-monooxygenase catalytic subunit | polymer | 658 | 75122.8 | 1 | UniProt (P0ABE7) UniProt (Q9BXA5) UniProt (Q9GV45) Pfam (PF07361) Pfam (PF00001) In PDB | Escherichia coli | Cytochrome b-562,G-protein coupled receptor 91,P2Y purinoceptor 1-like,19kOLase |
5 | S | scFv16 | polymer | 286 | 30668.2 | 1 | Homo sapiens (human) | ||
6 | R | (2R,3S)-oxirane-2,3-dicarboxylic acid | non-polymer | 132.1 | 1 | Chemie (U9S) |
Sequence modifications
B: 2 - 340 (UniProt: P62873)
R: -115 - -11 (UniProt: P0ABE7)
R: 1 - 334 (UniProt: Q9BXA5)
R: 339 - 495 (UniProt: Q9GV45)
PDB | External Database | Details |
---|---|---|
Met -10 | - | initiating methionine |
His -9 | - | expression tag |
His -8 | - | expression tag |
His -7 | - | expression tag |
His -6 | - | expression tag |
His -5 | - | expression tag |
His -4 | - | expression tag |
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
Leu -1 | - | expression tag |
Leu 0 | - | expression tag |
Gln 1 | - | expression tag |
Gly 341 | - | expression tag |
Ser 342 | - | expression tag |
Ser 343 | - | expression tag |
Gly 344 | - | expression tag |
Gly 345 | - | expression tag |
Gly 346 | - | expression tag |
Gly 347 | - | expression tag |
Ser 348 | - | expression tag |
Gly 349 | - | expression tag |
Gly 350 | - | expression tag |
Gly 351 | - | expression tag |
Gly 352 | - | expression tag |
Ser 353 | - | expression tag |
Ser 354 | - | expression tag |
Gly 355 | - | expression tag |
Val 356 | - | expression tag |
Ser 357 | - | expression tag |
Gly 358 | - | expression tag |
Trp 359 | - | expression tag |
Arg 360 | - | expression tag |
Leu 361 | - | expression tag |
Phe 362 | - | expression tag |
Lys 363 | - | expression tag |
Lys 364 | - | expression tag |
Ile 365 | - | expression tag |
Ser 366 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -162 | - | initiating methionine |
Lys -161 | - | expression tag |
Thr -160 | - | expression tag |
Ile -159 | - | expression tag |
Ile -158 | - | expression tag |
Ala -157 | - | expression tag |
Leu -156 | - | expression tag |
Ser -155 | - | expression tag |
Tyr -154 | - | expression tag |
Ile -153 | - | expression tag |
Phe -152 | - | expression tag |
Cys -151 | - | expression tag |
Leu -150 | - | expression tag |
Val -149 | - | expression tag |
Phe -148 | - | expression tag |
Ala -147 | - | expression tag |
Asp -146 | - | expression tag |
Tyr -145 | - | expression tag |
Lys -144 | - | expression tag |
Asp -143 | - | expression tag |
Asp -142 | - | expression tag |
Asp -141 | - | expression tag |
Asp -140 | - | expression tag |
Ala -139 | - | expression tag |
Gly -138 | - | expression tag |
Arg -137 | - | expression tag |
Ala -136 | - | expression tag |
His -135 | - | expression tag |
His -134 | - | expression tag |
His -133 | - | expression tag |
His -132 | - | expression tag |
His -131 | - | expression tag |
His -130 | - | expression tag |
His -129 | - | expression tag |
His -128 | - | expression tag |
His -127 | - | expression tag |
His -126 | - | expression tag |
Glu -125 | - | expression tag |
Asn -124 | - | expression tag |
Leu -123 | - | expression tag |
Tyr -122 | - | expression tag |
Phe -121 | - | expression tag |
Gln -120 | - | expression tag |
Ser -119 | - | expression tag |
Gly -118 | - | expression tag |
Ala -117 | - | expression tag |
Pro -116 | - | expression tag |
Trp -109 | Met 29 | conflict |
Ile -14 | His 124 | conflict |
Leu -10 | - | linker |
Leu -9 | - | linker |
Glu -8 | - | linker |
Val -7 | - | linker |
Leu -6 | - | linker |
Phe -5 | - | linker |
Gln -4 | - | linker |
Gly -3 | - | linker |
Pro -2 | - | linker |
Glu -1 | - | linker |
Phe 0 | - | linker |
PDB | External Database | Details |
---|---|---|
Phe 46 | Tyr 46 | conflict |
Leu 49 | Ile 49 | conflict |
Cys 51 | Ser 51 | conflict |
Ile 67 | Val 67 | conflict |
Tyr 175 | Phe 175 | conflict |
Leu 221 | Val 221 | conflict |
Glu 304 | Asp 304 | conflict |
Lys 309 | Gln 309 | conflict |
Arg 321 | Ser 321 | conflict |
Ala 335 | - | linker |
Ala 336 | - | linker |
Ala 337 | - | linker |
Val 338 | - | linker |
PDB | External Database | Details |
---|---|---|
Glu 342 | Ala 31 | conflict |
Glu 349 | Gln 38 | conflict |
Ala 353 | Gly 42 | conflict |
Leu 356 | Gln 45 | conflict |
Val 365 | Leu 54 | conflict |
Leu 369 | Phe 58 | conflict |
Asn 371 | Ala 60 | conflict |
Ala 373 | Gly 62 | conflict |
Arg 381 | Lys 70 | conflict |
Ile 382 | Val 71 | conflict |
Arg 384 | Leu 73 | conflict |
Ala 389 | Gly 78 | conflict |
Ile 392 | Ala 81 | conflict |
Ala 405 | Gly 94 | conflict |
Asp 406 | Phe 95 | conflict |
Ala 409 | Gly 98 | conflict |
Gln 410 | Leu 99 | conflict |
Glu 413 | Met 102 | conflict |
Val 414 | Ile 103 | conflict |
Val 428 | Ile 117 | conflict |
Pro 431 | His 120 | conflict |
Leu 445 | Ile 134 | conflict |
Asn 446 | Asp 135 | conflict |
Glu 453 | Pro 142 | conflict |
Lys 462 | Gln 151 | conflict |
Ile 476 | Tyr 165 | conflict |
Thr 482 | Asn 171 | conflict |
Met 487 | Leu 176 | conflict |
Ser 495 | Gly 184 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 195123.1 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 132.1 | |
All* | Total formula weight | 195255.1 |