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8JHG

Native SUV420H1 bound to 167-bp nucleosome

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(K)
Histone-lysine N-methyltransferase KMT5Bpolymer36141330.71UniProt (Q4FZB7)
Pfam (PF00856)
Homo sapiens (human)Lysine N-methyltransferase 5B,Lysine-specific methyltransferase 5B,Suppressor of variegation 4-20 homolog 1,Su(var)4-20 homolog 1,Suv4-20h1,[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B,[histone H4]-lysine20 N-methyltransferase KMT5B
2B, F
(A, E)
Histone H3.1polymer13615437.22UniProt (P68431)
Pfam (PF00125)
Homo sapiens (human)Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l
3C, G
(B, F)
Histone H4polymer869863.62UniProt (P62805)
Pfam (PF15511)
Homo sapiens (human)
4D, H
(C, G)
Histone H2A type 1-B/Epolymer11512675.82UniProt (P04908)
Pfam (PF00125)
Pfam (PF16211)
Homo sapiens (human)Histone H2A.2,Histone H2A/a,Histone H2A/m
5E, I
(D, H)
Histone H2B type 1-Kpolymer9510607.22UniProt (O60814)
Pfam (PF00125)
Homo sapiens (human)H2B K,HIRA-interacting protein 1
6J
(I)
DNA (160-MER)polymer16049038.21Homo sapiens (human)
7K
(J)
DNA (160-MER)polymer16049745.71Homo sapiens (human)
8L
(K)
ZINC IONnon-polymer65.41Chemie (ZN)
9M
(K)
S-ADENOSYLMETHIONINEnon-polymer398.41Chemie (SAM)
Sequence modifications
B, F: 17 - 102 (UniProt: P62805)
PDBExternal DatabaseDetails
Met 20Lys 21engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains11
Total formula weight237282.1
Non-Polymers*Number of molecules2
Total formula weight463.8
All*Total formula weight237745.9
*Water molecules are not included.

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PDB entries from 2024-10-30

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