8J5K
Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, a | PsbA | polymer | 333 | 36951.1 | 2 | Pfam (PF00124) UniProt (by SIFTS) (A0A8F5GJ32) In PDB | Stephanocyclus meneghinianus | |
2 | B, b | PsbB | polymer | 481 | 53505.0 | 2 | Pfam (PF00421) UniProt (by SIFTS) (A0A679C6E3) In PDB | Stephanocyclus meneghinianus | |
3 | C, c | PsbC | polymer | 450 | 49357.3 | 2 | Pfam (PF00421) UniProt (by SIFTS) (A0A8F5GHI6) In PDB | Stephanocyclus meneghinianus | |
4 | D, d | PsbD | polymer | 340 | 37826.1 | 2 | Pfam (PF00124) UniProt (by SIFTS) (A0A679C012) In PDB | Stephanocyclus meneghinianus | |
5 | E, e | PsbE | polymer | 75 | 8687.8 | 2 | Pfam (PF00283) Pfam (PF00284) UniProt (by SIFTS) (A0A679C209) In PDB | Stephanocyclus meneghinianus | |
6 | F, f | PsbF | polymer | 31 | 3555.3 | 2 | Pfam (PF00283) UniProt (by SIFTS) (A0T0U1) In PDB | Stephanocyclus meneghinianus | |
7 | H, h | PsbH | polymer | 65 | 7188.5 | 2 | Pfam (PF00737) UniProt (by SIFTS) (B7XBY7) In PDB | Stephanocyclus meneghinianus | |
8 | I, i | PsbI | polymer | 34 | 3940.7 | 2 | Pfam (PF02532) UniProt (by SIFTS) (A0A679BVT8) In PDB | Stephanocyclus meneghinianus | |
9 | J, j | PsbJ | polymer | 34 | 3487.1 | 2 | Pfam (PF01788) UniProt (by SIFTS) (A0T0T9) In PDB | Stephanocyclus meneghinianus | |
10 | K, k | PsbK | polymer | 37 | 4225.1 | 2 | Pfam (PF02533) UniProt (by SIFTS) (A0A2H5N031) In PDB | Stephanocyclus meneghinianus | |
11 | L, l | PsbL | polymer | 37 | 4235.9 | 2 | Pfam (PF02419) UniProt (by SIFTS) (A0A151DYG7) In PDB | Stephanocyclus meneghinianus | |
12 | M, m | PsbM | polymer | 41 | 4358.0 | 2 | UniProt (by SIFTS) (A0A679C2A0) In PDB | Stephanocyclus meneghinianus | |
13 | N, n | Psb34 | polymer | 30 | 2571.2 | 2 | Stephanocyclus meneghinianus | ||
14 | O, o | PsbO | polymer | 248 | 26749.3 | 2 | Pfam (PF01716) UniProt (by SIFTS) (B6ZHE8) In PDB | Stephanocyclus meneghinianus | |
15 | Q, q | PsbQ' | polymer | 145 | 16001.9 | 2 | UniProt (by SIFTS) (B6ZHE9) In PDB | Stephanocyclus meneghinianus | |
16 | T, t | PsbT | polymer | 29 | 3441.2 | 2 | Pfam (PF01405) UniProt (by SIFTS) (A0A679C6E6) In PDB | Stephanocyclus meneghinianus | |
17 | U, u | PsbU | polymer | 92 | 10010.3 | 2 | Pfam (PF06514) UniProt (by SIFTS) (B6ZHF0) In PDB | Stephanocyclus meneghinianus | |
18 | V, v | PsbV | polymer | 136 | 14757.7 | 2 | Pfam (PF14495) UniProt (by SIFTS) (A0A8F5GGT9) In PDB | Stephanocyclus meneghinianus | |
19 | W, w | PsbW | polymer | 50 | 5606.4 | 2 | Stephanocyclus meneghinianus | ||
20 | X, x | PsbX | polymer | 34 | 3389.1 | 2 | Pfam (PF06596) UniProt (by SIFTS) (B6ZHF2) In PDB | Stephanocyclus meneghinianus | |
21 | Y, y | PsbY | polymer | 33 | 3634.3 | 2 | Pfam (PF06298) UniProt (by SIFTS) (A0T0V3) In PDB | Stephanocyclus meneghinianus | |
22 | Z, z | PsbZ | polymer | 59 | 6233.3 | 2 | Pfam (PF01737) UniProt (by SIFTS) (A0T0T3) In PDB | Stephanocyclus meneghinianus | |
23 | 5, 0 | FCPII-G, fucoxanthin chlorophyll a/c binding protein | polymer | 169 | 18512.0 | 2 | Stephanocyclus meneghinianus | ||
24 | 7, 2 | FCPII-H2, fucoxanthin chlorophyll a/c binding protein | polymer | 164 | 18251.7 | 2 | Stephanocyclus meneghinianus | ||
25 | 6, 1 | FCPII-H1, fucoxanthin chlorophyll a/c binding protein | polymer | 164 | 18085.5 | 2 | Pfam (PF00504) UniProt (by SIFTS) (B8BX93) In PDB | Stephanocyclus meneghinianus | |
26 | p, P | FCPII-I, fucoxanthin chlorophyll a/c binding protein | polymer | 214 | 23279.2 | 2 | Pfam (PF00504) UniProt (by SIFTS) (B8BUU4) In PDB | Stephanocyclus meneghinianus | |
27 | 4, 9 | FCPII-K, fucoxanthin chlorophyll a/c binding protein | polymer | 153 | 13039.1 | 2 | Stephanocyclus meneghinianus | ||
28 | 3, 8 | FCPII-J, fucoxanthin chlorophyll a/c binding protein | polymer | 163 | 17850.2 | 2 | Pfam (PF00504) UniProt (by SIFTS) (B8BVI1) In PDB | Stephanocyclus meneghinianus | |
29 | A, a | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
30 | A, a | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) | |||
31 | B, C, b, c, 6... | CHLOROPHYLL A | non-polymer | 893.5 | 206 | Chemie (CLA) | |||
32 | A, a | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
33 | K, C, k, c, B... | BETA-CAROTENE | non-polymer | 536.9 | 20 | Chemie (BCR) | |||
34 | A, B, a, b, 0... | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) | |||
35 | A, D, d, a | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) | |||
36 | h, B, A, D, b... | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 14 | Chemie (LHG) | |||
37 | M, j, m, W, Y... | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 22 | Chemie (LMG) | |||
38 | C, c | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
39 | C, c, H, h | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 8 | Chemie (DGD) | |||
40 | D, d | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) | |||
41 | V, v, F, f | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 4 | Chemie (HEM) | |||
42 | 5, 7, P, 9, 3... | (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate | non-polymer | 658.9 | 24 | Chemie (A86) | |||
43 | 0, 5 | (1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol | non-polymer | 566.9 | 2 | Chemie (ET4) | |||
44 | 7, P, 3, 1, p... | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol | non-polymer | 582.9 | 12 | Chemie (DD6) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 56 |
Total formula weight | 837460.3 | |
Non-Polymers* | Number of molecules | 336 |
Total formula weight | 270064.1 | |
All* | Total formula weight | 1107524.4 |