8J1T
Local refined cryo-EM structure of Omicron BA.5 RBD in complex with 8-9D Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | H | 8-9D heavy chain | polymer | 115 | 12439.9 | 1 | Homo sapiens | ||
| 2 | K | 8-9D light chain | polymer | 108 | 11729.1 | 1 | Homo sapiens | ||
| 3 | F | Spike protein | polymer | 194 | 21905.7 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 |
Sequence modifications
F: 334 - 527 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Asp 339 | Gly 339 | variant |
| Phe 371 | Ser 371 | variant |
| Pro 373 | Ser 373 | variant |
| Phe 375 | Ser 375 | variant |
| Ala 376 | Thr 376 | conflict |
| Asn 405 | Asp 405 | conflict |
| Ser 408 | Arg 408 | conflict |
| Asn 417 | Lys 417 | variant |
| Lys 440 | Asn 440 | variant |
| Arg 452 | Leu 452 | conflict |
| Asn 477 | Ser 477 | variant |
| Lys 478 | Thr 478 | variant |
| Ala 484 | Glu 484 | variant |
| Val 486 | Phe 486 | conflict |
| Arg 498 | Gln 498 | variant |
| Tyr 501 | Asn 501 | variant |
| His 505 | Tyr 505 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 46074.6 | |
| All* | Total formula weight | 46074.6 |
