8J1Q
CryoEM structure of SARS CoV-2 RBD and Aptamer complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | E | AM032-0 | polymer | 80 | 26517.8 | 1 | synthetic construct | ||
2 | D | AM047-0 | polymer | 52 | 18034.3 | 1 | synthetic construct | ||
3 | A | Fab Light chain (REGN10987) | polymer | 224 | 23909.3 | 1 | Homo sapiens | ||
4 | B | Fab heavy chain (REGN10987) | polymer | 248 | 26705.9 | 1 | Homo sapiens | ||
5 | C | Spike protein S1 | polymer | 253 | 28415.7 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | |
6 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) |
Sequence modifications
C: 319 - 541 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Glu 542 | - | expression tag |
Asn 543 | - | expression tag |
Leu 544 | - | expression tag |
Tyr 545 | - | expression tag |
Phe 546 | - | expression tag |
Gln 547 | - | expression tag |
Gly 548 | - | expression tag |
Ala 549 | - | expression tag |
Ala 550 | - | expression tag |
Ala 551 | - | expression tag |
Gly 552 | - | expression tag |
Gly 553 | - | expression tag |
Ser 554 | - | expression tag |
His 555 | - | expression tag |
His 556 | - | expression tag |
His 557 | - | expression tag |
His 558 | - | expression tag |
His 559 | - | expression tag |
His 560 | - | expression tag |
Gly 561 | - | expression tag |
Gly 562 | - | expression tag |
Ser 563 | - | expression tag |
Asp 564 | - | expression tag |
Tyr 565 | - | expression tag |
Lys 566 | - | expression tag |
Asp 567 | - | expression tag |
Asp 568 | - | expression tag |
Asp 569 | - | expression tag |
Asp 570 | - | expression tag |
Lys 571 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 123583.0 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 221.2 | |
All* | Total formula weight | 123804.2 |