8IWH
Structure and characteristics of a photosystem II supercomplex containing monomeric LHCX and dimeric FCPII antennae from the diatom Thalassiosira pseudonana
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, TA (A, a) | Photosystem II protein D1 | polymer | 333 | 36982.2 | 2 | UniProt (A0T0W2) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | PSII D1 protein,Photosystem II Q(B) protein |
| 2 | B, UA (B, b) | Photosystem II CP47 reaction center protein | polymer | 509 | 56465.3 | 2 | UniProt (A0T0P5) Pfam (PF00421) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 3 | C, D (C, c) | Photosystem II CP43 reaction center protein | polymer | 470 | 51776.2 | 2 | UniProt (A0T0T1) Pfam (PF00421) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | PSII 43 kDa protein,Protein CP-43 |
| 4 | E, F (D, d) | Photosystem II D2 protein | polymer | 351 | 39089.6 | 2 | UniProt (A0T0T0) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | PSII D2 protein,Photosystem Q(A) protein |
| 5 | G, H (E, e) | Cytochrome b559 subunit alpha | polymer | 84 | 9521.7 | 2 | UniProt (A0T0U2) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | PSII reaction center subunit V |
| 6 | I, J (F, f) | Cytochrome b559 subunit beta | polymer | 43 | 4913.8 | 2 | UniProt (A0T0U1) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | PSII reaction center subunit VI |
| 7 | K, L (G, g) | Photosystem II Psb31 protein domain-containing protein | polymer | 176 | 18176.7 | 2 | UniProt (B8CC14) Pfam (PF18240) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 8 | M, N (H, h) | Photosystem II reaction center protein H | polymer | 66 | 7391.8 | 2 | UniProt (A0T0P8) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | PSII-H |
| 9 | O, P (I, i) | Photosystem II reaction center protein I | polymer | 34 | 3940.7 | 2 | UniProt (A0T0U9) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | PSII-I,PSII 4.8 kDa protein |
| 10 | Q, R (J, j) | Photosystem II reaction center protein J | polymer | 39 | 4045.8 | 2 | UniProt (A0T0T9) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | PSII-J |
| 11 | S, T (K, k) | Photosystem II reaction center protein K | polymer | 44 | 4984.0 | 2 | UniProt (A0T0S8) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | PSII-K |
| 12 | U, V (L, l) | Photosystem II reaction center protein L | polymer | 38 | 4367.1 | 2 | UniProt (A0T0U0) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | PSII-L |
| 13 | W, X (M, m) | Photosystem II reaction center M protein, plastid | polymer | 113 | 12051.0 | 2 | UniProt (B8BYH2) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 14 | Y, Z (n, N) | Photosystem II subunit, PsbN. | polymer | 30 | 2571.2 | 2 | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | ||
| 15 | AA, BA (O, o) | Oxygen-evolving enhancer protein 1 | polymer | 305 | 32168.5 | 2 | UniProt (B8C4I5) Pfam (PF01716) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 16 | CA, DA (T, t) | Photosystem II reaction center protein T | polymer | 28 | 3314.0 | 2 | UniProt (A0T0P6) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | PSII-T |
| 17 | EA, FA (U, u) | PS II complex 12 kDa extrinsic protein | polymer | 148 | 15486.6 | 2 | UniProt (B8BVI4) Pfam (PF06514) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 18 | GA, HA (V, v) | Cytochrome c-550 | polymer | 162 | 17713.2 | 2 | UniProt (A0T0N2) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | Cytochrome c550 |
| 19 | IA, JA (W, w) | Photosystem II subunit, PsbW | polymer | 54 | 6096.5 | 2 | UniProt (B8C8Y3) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 20 | KA, LA (X, x) | Photosystem II reaction center X protein | polymer | 38 | 3933.6 | 2 | UniProt (A0T0N4) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 21 | MA, NA (Z, z) | Photosystem II reaction center protein Z | polymer | 61 | 6417.5 | 2 | UniProt (A0T0T3) Pfam (PF01737) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 22 | OA (3) | Fucoxanthin chl a/c protein, lhca clade | polymer | 220 | 24101.0 | 1 | UniProt (B8BUU4) Pfam (PF00504) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 23 | PA (4) | Fucoxanthin-chlorophyll a-c binding protein, plastid | polymer | 196 | 21059.0 | 1 | UniProt (B8BVI1) Pfam (PF00504) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 24 | QA (5) | Fucoxanthin chlorophyll a/c protein 6 | polymer | 192 | 20872.7 | 1 | UniProt (B8BX92) Pfam (PF00504) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 25 | RA (6) | Fucoxanthin chlorophyll a/c protein 5 | polymer | 199 | 21402.5 | 1 | UniProt (B8CEV5) Pfam (PF00504) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 26 | SA, ZA (7, 0) | Fucoxanthin chlorophyll a/c protein-LI818 clade | polymer | 199 | 21279.4 | 2 | UniProt (B5YLU3) Pfam (PF00504) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 27 | VA, WA (Y, y) | Photosystem II reaction center protein Ycf12 | polymer | 34 | 3591.5 | 2 | UniProt (A0T0T2) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 28 | XA, YA (Q, q) | Photosystem II subunit, PsbQ. | polymer | 211 | 22439.2 | 2 | UniProt (B8BSY9) Pfam (PF05757) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 29 | AB, BB, CB, DB (9, 2, 8, 1) | Fucoxanthin chlorophyll a/c light-harvesting protein, major type | polymer | 193 | 20786.7 | 4 | UniProt (B8BX93) Pfam (PF00504) | Thalassiosira pseudonana (Marine diatom Cyclotella nana) | |
| 30 | AL, BL, CD, CF, CL... (b, C, H, A, h...) | BETA-CAROTENE | non-polymer | 536.9 | 22 | Chemie (BCR) PubChem (573) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (54603957) PubChem (54612003) PubChem (86765360) PubChem (5315709) PubChem (5280489) PubChem (91827292) PubChem (92863345) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (124919640) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (6477957) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (146673260) PubChem (152743364) PubChem (124919639) PubChem (160505766) PubChem (129651951) PubChem (132274419) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 31 | FB, ZJ (A, a) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 32 | AK, GB (a, A) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) PubChem (312) | |||
| 33 | AC, AD, AH, AJ, AN... (B, C, 3, 6, 2...) | CHLOROPHYLL A | non-polymer | 893.5 | 183 | Chemie (CLA) | |||
| 34 | DK, EK, JB, KB (a, A) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 35 | NB, WJ (A, a) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) PubChem (769) | |||
| 36 | AG, CG, FF, IF, JK... (W, w, H, h, b...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 20 | Chemie (LHG) PubChem (46936292) PubChem (446440) PubChem (73416066) PubChem (65144) PubChem (9547104) PubChem (13305396) PubChem (11846227) PubChem (138986743) | |||
| 37 | HE, HK, JF, OC, OF... (D, a, i, B, L...) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 12 | Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (5459390) PubChem (102201395) PubChem (134765349) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) | |||
| 38 | AE, BE, BH, CE, DF... (c, 3, H, C, h...) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 11 | Chemie (DGD) PubChem (24865462) PubChem (24865463) PubChem (50904896) PubChem (53480668) PubChem (46936671) PubChem (448441) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (154573294) PubChem (171123158) PubChem (134746152) PubChem (140529801) | |||
| 39 | DE, DL, EE, EL, FG... (c, b, w, Q, C...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 26 | Chemie (LMG) | |||
| 40 | FE, XE (D, d) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) PubChem (27284) | |||
| 41 | ME, TE (D, d) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 2 | Chemie (PL9) PubChem (23304240) PubChem (20286) PubChem (21881166) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402) | |||
| 42 | AF, BF, XF, YF (e, F, V, v) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 4 | Chemie (HEM) | |||
| 43 | DG, IG, NI, SH, TF... (w, 3, 5, 4, T...) | DODECYL-ALPHA-D-MALTOSIDE | non-polymer | 510.6 | 6 | Chemie (LMU) PubChem (16220143) PubChem (24802120) PubChem (25021193) PubChem (44119948) PubChem (114880) PubChem (46936627) PubChem (53393702) PubChem (56845466) PubChem (58112562) PubChem (58253045) PubChem (60087035) PubChem (68322761) PubChem (68338004) PubChem (68441652) PubChem (445456) PubChem (70796428) PubChem (70813879) PubChem (70839937) PubChem (75487624) PubChem (59615220) PubChem (3481630) PubChem (2802066) PubChem (89796216) PubChem (91094859) PubChem (90817611) PubChem (91608950) PubChem (95566087) PubChem (102565427) PubChem (95566088) PubChem (95566089) PubChem (95566090) PubChem (96327540) PubChem (97038234) PubChem (97038235) PubChem (97294875) PubChem (98046621) PubChem (98046622) PubChem (98046623) PubChem (100976848) PubChem (101111379) PubChem (101111381) PubChem (102219025) PubChem (117716045) PubChem (117753833) PubChem (118443377) PubChem (9849225) PubChem (123281924) PubChem (10413991) PubChem (124184997) PubChem (124196217) PubChem (124196220) PubChem (140505128) PubChem (153835411) PubChem (155885597) PubChem (126735853) PubChem (126735860) PubChem (169619620) PubChem (173767704) PubChem (173885518) PubChem (129720403) PubChem (134694723) PubChem (140479759) PubChem (140841257) PubChem (154810097) PubChem (159812235) PubChem (163184859) | |||
| 44 | BJ, II, RG (6, 5, 3) | Chlorophyll c1 | non-polymer | 610.9 | 3 | Chemie (KC1) | |||
| 45 | AI, AM, CH, DH, EJ... (5, 9, 4, 7, 8...) | (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate | non-polymer | 658.9 | 29 | Chemie (A86) PubChem (21776532) PubChem (91530) PubChem (46781664) PubChem (541529) PubChem (59370904) PubChem (59438846) PubChem (177442568) PubChem (89808300) PubChem (90784335) PubChem (88873479) PubChem (91266697) PubChem (5281239) PubChem (101608998) PubChem (102200897) PubChem (5364094) PubChem (124298579) PubChem (124298578) PubChem (124298576) PubChem (125183403) PubChem (9961263) PubChem (102200898) PubChem (102232483) PubChem (10009558) PubChem (123264561) PubChem (124298577) PubChem (140222158) PubChem (15559432) PubChem (15559433) PubChem (15559434) PubChem (15559435) PubChem (162962337) PubChem (163285374) PubChem (138115313) PubChem (140222160) PubChem (154828419) PubChem (162962338) PubChem (162962339) PubChem (162962340) PubChem (162962341) PubChem (172812670) | |||
| 46 | AO, BM, CM, EH, JN... (1, 9, 4, 8, 2...) | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol | non-polymer | 582.9 | 10 | Chemie (DD6) PubChem (72964028) PubChem (14160123) PubChem (102007228) PubChem (10817096) PubChem (6449888) PubChem (10579169) PubChem (11621213) PubChem (172636470) PubChem (137349167) PubChem (162909187) PubChem (172781022) | |||
| 47 | DI, IH, JJ, OL, WI (5, 4, 7, 0, 6) | Chlorophyll c2 | non-polymer | 608.9 | 5 | Chemie (KC2) | |||
| 48 | FJ, KL (7, 0) | (1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol | non-polymer | 566.9 | 2 | Chemie (ET4) PubChem (78410114) PubChem (90471431) PubChem (6440986) PubChem (12312961) PubChem (11124618) PubChem (172729082) PubChem (162943841) PubChem (162943842) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 948016.0 | |
| Non-Polymers* | Number of molecules | 347 |
| Total formula weight | 272674.0 | |
| All* | Total formula weight | 1220689.9 |
