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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8IWH

Structure and characteristics of a photosystem II supercomplex containing monomeric LHCX and dimeric FCPII antennae from the diatom Thalassiosira pseudonana

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, aPhotosystem II protein D1polymer33336982.22UniProt (A0T0W2)
Pfam (PF00124)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)PSII D1 protein,Photosystem II Q(B) protein
2B, bPhotosystem II CP47 reaction center proteinpolymer50956465.32UniProt (A0T0P5)
Pfam (PF00421)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
3C, cPhotosystem II CP43 reaction center proteinpolymer47051776.22UniProt (A0T0T1)
Pfam (PF00421)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)PSII 43 kDa protein,Protein CP-43
4D, dPhotosystem II D2 proteinpolymer35139089.62UniProt (A0T0T0)
Pfam (PF00124)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)PSII D2 protein,Photosystem Q(A) protein
5E, eCytochrome b559 subunit alphapolymer849521.72UniProt (A0T0U2)
Pfam (PF00283)
Pfam (PF00284)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)PSII reaction center subunit V
6F, fCytochrome b559 subunit betapolymer434913.82UniProt (A0T0U1)
Pfam (PF00283)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)PSII reaction center subunit VI
7G, gPhotosystem II Psb31 protein domain-containing proteinpolymer17618176.72UniProt (B8CC14)
Pfam (PF18240)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
8H, hPhotosystem II reaction center protein Hpolymer667391.82UniProt (A0T0P8)
Pfam (PF00737)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)PSII-H
9I, iPhotosystem II reaction center protein Ipolymer343940.72UniProt (A0T0U9)
Pfam (PF02532)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)PSII-I,PSII 4.8 kDa protein
10J, jPhotosystem II reaction center protein Jpolymer394045.82UniProt (A0T0T9)
Pfam (PF01788)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)PSII-J
11K, kPhotosystem II reaction center protein Kpolymer444984.02UniProt (A0T0S8)
Pfam (PF02533)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)PSII-K
12L, lPhotosystem II reaction center protein Lpolymer384367.12UniProt (A0T0U0)
Pfam (PF02419)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)PSII-L
13M, mPhotosystem II reaction center M protein, plastidpolymer11312051.02UniProt (B8BYH2)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
14n, NPhotosystem II subunit, PsbN.polymer302571.22Thalassiosira pseudonana (Marine diatom Cyclotella nana)
15O, oOxygen-evolving enhancer protein 1polymer30532168.52UniProt (B8C4I5)
Pfam (PF01716)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
16T, tPhotosystem II reaction center protein Tpolymer283314.02UniProt (A0T0P6)
Pfam (PF01405)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)PSII-T
17U, uPS II complex 12 kDa extrinsic proteinpolymer14815486.62UniProt (B8BVI4)
Pfam (PF06514)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
18V, vCytochrome c-550polymer16217713.22UniProt (A0T0N2)
Pfam (PF14495)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)Cytochrome c550
19W, wPhotosystem II subunit, PsbWpolymer546096.52UniProt (B8C8Y3)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
20X, xPhotosystem II reaction center X proteinpolymer383933.62UniProt (A0T0N4)
Pfam (PF06596)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
21Z, zPhotosystem II reaction center protein Zpolymer616417.52UniProt (A0T0T3)
Pfam (PF01737)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
223Fucoxanthin chl a/c protein, lhca cladepolymer22024101.01UniProt (B8BUU4)
Pfam (PF00504)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
234Fucoxanthin-chlorophyll a-c binding protein, plastidpolymer19621059.01UniProt (B8BVI1)
Pfam (PF00504)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
245Fucoxanthin chlorophyll a/c protein 6polymer19220872.71UniProt (B8BX92)
Pfam (PF00504)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
256Fucoxanthin chlorophyll a/c protein 5polymer19921402.51UniProt (B8CEV5)
Pfam (PF00504)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
267, 0Fucoxanthin chlorophyll a/c protein-LI818 cladepolymer19921279.42UniProt (B5YLU3)
Pfam (PF00504)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
27Y, yPhotosystem II reaction center protein Ycf12polymer343591.52UniProt (A0T0T2)
Pfam (PF05969)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
28Q, qPhotosystem II subunit, PsbQ.polymer21122439.22UniProt (B8BSY9)
Pfam (PF05757)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
299, 2, 8, 1Fucoxanthin chlorophyll a/c light-harvesting protein, major typepolymer19320786.74UniProt (B8BX93)
Pfam (PF00504)
In PDB		Thalassiosira pseudonana (Marine diatom Cyclotella nana)
30b, C, H, A, h...BETA-CAROTENEnon-polymer536.922Chemie (BCR)
31A, aCA-MN4-O5 CLUSTERnon-polymer339.82Chemie (OEX)
32a, ACHLORIDE IONnon-polymer35.52Chemie (CL)
33B, C, 3, 6, 2...CHLOROPHYLL Anon-polymer893.5183Chemie (CLA)
34a, APHEOPHYTIN Anon-polymer871.24Chemie (PHO)
35A, aBICARBONATE IONnon-polymer61.02Chemie (BCT)
36W, w, H, h, b...1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLEnon-polymer723.020Chemie (LHG)
37D, a, i, B, L...1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLnon-polymer795.112Chemie (SQD)
38c, 3, H, C, h...DIGALACTOSYL DIACYL GLYCEROL (DGDG)non-polymer949.311Chemie (DGD)
39c, b, w, Q, C...1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDEnon-polymer787.226Chemie (LMG)
40D, dFE (II) IONnon-polymer55.82Chemie (FE2)
41D, d2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEnon-polymer749.22Chemie (PL9)
42e, F, V, vPROTOPORPHYRIN IX CONTAINING FEnon-polymer616.54Chemie (HEM)
43w, 3, 5, 4, T...DODECYL-ALPHA-D-MALTOSIDEnon-polymer510.66Chemie (LMU)
446, 5, 3Chlorophyll c1non-polymer610.93Chemie (KC1)
455, 9, 4, 7, 8...(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetatenon-polymer658.929Chemie (A86)
461, 9, 4, 8, 2...(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diolnon-polymer582.910Chemie (DD6)
475, 4, 7, 0, 6Chlorophyll c2non-polymer608.95Chemie (KC2)
487, 0(1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-olnon-polymer566.92Chemie (ET4)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains56
Total formula weight948016.0
Non-Polymers*Number of molecules347
Total formula weight272674.0
All*Total formula weight1220689.9
*Water molecules are not included.

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PDB entries from 2024-10-09

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