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8IR1

human nuclear pre-60S ribosomal particle - State A

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(y)
60S ribosomal protein L12polymer16517847.61UniProt (P30050)
Pfam (PF03946)
Pfam (PF00298)
Homo sapiens (human)Large ribosomal subunit protein uL11
2B
(4)
GTP-binding protein 4polymer63474107.81UniProt (Q9BZE4)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
Homo sapiens (human)Chronic renal failure gene protein,GTP-binding protein NGB
3C
(6)
Eukaryotic translation initiation factor 6polymer24526620.01UniProt (P56537)
Pfam (PF01912)
Homo sapiens (human)eIF-6,B(2)GCN homolog,B4 integrin interactor,CAB,p27(BBP)
4D
(7)
Probable ribosome biogenesis protein RLP24polymer16319666.31UniProt (Q9UHA3)
Pfam (PF01246)
Homo sapiens (human)Ribosomal L24 domain-containing protein 1,Ribosomal protein L24-like
5E
(B)
60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
Homo sapiens (human)Large ribosomal subunit protein uL3
6F
(D)
60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
Homo sapiens (human)Large ribosomal subunit protein uL4
7G
(E)
60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL30
8H
(F)
60S ribosomal protein L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
Homo sapiens (human)Large ribosomal subunit protein eL34
9I
(G)
60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL8
10J
(H)
60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
Homo sapiens (human)Large ribosomal subunit protein uL29
11K
(I)
60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
Homo sapiens (human)Large ribosomal subunit protein uL6
12L
(K)
60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
Homo sapiens (human)Large ribosomal subunit protein eL36
13M
(L)
60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
Homo sapiens (human)Large ribosomal subunit protein uL15
14N
(M)
60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
Homo sapiens (human)Large ribosomal subunit protein eL37
15O
(P)
60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
Homo sapiens (human)Large ribosomal subunit protein eL39
16P
(Q)
60S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
Homo sapiens (human)Large ribosomal subunit protein eL13
17Q
(S)
60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
Homo sapiens (human)Large ribosomal subunit protein eL14
18R
(U)
60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
Homo sapiens (human)Large ribosomal subunit protein eL15
19S
(V)
60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
Homo sapiens (human)Large ribosomal subunit protein uL13
20T
(X)
60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
Homo sapiens (human)Large ribosomal subunit protein eL43
21U
(Z)
60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (human)Large ribosomal subunit protein eL18
22V
(a)
60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
Homo sapiens (human)Large ribosomal subunit protein eL19
23W
(b)
60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (human)Large ribosomal subunit protein eL20
24X
(c)
60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
Homo sapiens (human)Large ribosomal subunit protein eL21
25Y
(e)
60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
Homo sapiens (human)Large ribosomal subunit protein uL14
26Z
(h)
60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
Homo sapiens (human)Large ribosomal subunit protein uL24
27AA
(i)
60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
Homo sapiens (human)Large ribosomal subunit protein eL27
28BA
(l)
60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
Homo sapiens (human)Large ribosomal subunit protein eL28
29CA
(m)
60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (human)Large ribosomal subunit protein uL2
30DA
(n)
60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
Homo sapiens (human)Large ribosomal subunit protein eL33
31EA
(o)
60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
Homo sapiens (human)Large ribosomal subunit protein eL6
32FA
(p)
60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
Homo sapiens (human)Large ribosomal subunit protein uL30
33GA
(z)
Protein LLP homologpolymer12915268.41UniProt (Q9BRT6)
Pfam (PF10169)
Homo sapiens (human)Protein LAPS18-like
34HA
(A)
60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00673)
Pfam (PF00281)
Homo sapiens (human)Large ribosomal subunit protein uL5
35IA
(C)
60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
Homo sapiens (human)Large ribosomal subunit protein uL18
36JA
(J)
Ribosome biogenesis protein NSA2 homologpolymer26030136.71UniProt (O95478)
Pfam (PF01201)
Homo sapiens (human)Hairy cell leukemia protein 1,TGF-beta-inducible nuclear protein 1
37KA
(N)
Notchless protein homolog 1polymer48553387.11UniProt (Q9NVX2)
Pfam (PF08154)
Pfam (PF00400)
Homo sapiens (human)
38LA
(R)
Ribosome biogenesis regulatory protein homologpolymer36541278.51UniProt (Q15050)
Pfam (PF04939)
Homo sapiens (human)
39MA
(u)
Guanine nucleotide-binding protein-like 3polymer54962098.21UniProt (Q9BVP2)
Pfam (PF08701)
Pfam (PF01926)
Homo sapiens (human)E2-induced gene 3 protein,Novel nucleolar protein 47,NNP47,Nucleolar GTP-binding protein 3,Nucleostemin
40NA
(v)
mRNA turnover protein 4 homologpolymer23927602.51UniProt (Q9UKD2)
Pfam (PF00466)
Pfam (PF17777)
Homo sapiens (human)Ribosome assembly factor MRTO4
41OA
(w)
G Protein Nucleolar 2polymer73183796.11UniProt (Q13823)
Pfam (PF08153)
Pfam (PF01926)
Homo sapiens (human)Autoantigen NGP-1
42PA
(r)
Coiled-coil domain-containing protein 86polymer36040312.71UniProt (Q9H6F5)
Pfam (PF03879)
Homo sapiens (human)Cytokine-induced protein with coiled-coil domain
43QA
(2)
28S rRNApolymer50541636356.51Homo sapiens
44RA
(8)
5.8S rRMApolymer15650157.71GenBank (KY962518)Homo sapiens (human)
45SA
(g)
60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
Homo sapiens (human)Large ribosomal subunit protein uL23
46TA
(d)
60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
Homo sapiens (human)Large ribosomal subunit protein eL22
47UA
(j)
60S ribosomal protein L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
Homo sapiens (human)Large ribosomal subunit protein eL31
48VA
(k)
60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
Homo sapiens (human)Large ribosomal subunit protein eL32
49WA
(Y)
60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
Homo sapiens (human)Large ribosomal subunit protein uL22
50XA
(O)
60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
Homo sapiens (human)Large ribosomal subunit protein eL38
51YA
(W)
5S RNApolymer12038691.91GenBank (NR_023363)Homo sapiens (human)
52ZA
(T)
Ribosome production factor 2 homologpolymer30635658.11UniProt (Q9H7B2)
Pfam (PF04427)
Homo sapiens (human)Brix domain-containing protein 1,Ribosome biogenesis protein RPF2 homolog
53AB
(9)
pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3polymer84796726.91UniProt (Q8IY81)
Pfam (PF01728)
Pfam (PF11861)
Pfam (PF07780)
Homo sapiens (human)Protein ftsJ homolog 3,Putative rRNA methyltransferase 3
54BB
(w)
GUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
55CB
(w)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains53
Total formula weight3087351.8
Non-Polymers*Number of molecules2
Total formula weight547.5
All*Total formula weight3087899.3
*Water molecules are not included.

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PDB entries from 2025-06-11

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