8IPB
Wheat 80S ribosome pausing on AUG-Stop with cycloheximide
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (aa) | 18S ribosomal RNA | polymer | 1810 | 583613.6 | 1 | GenBank (2123606567) | Triticum aestivum (bread wheat) | |
| 2 | B (ba) | 40S ribosomal protein eS24 | polymer | 137 | 15739.7 | 1 | UniProt (A0A3B6PK86) Pfam (PF01282) | Triticum aestivum (bread wheat) | 40S ribosomal protein S24 |
| 3 | C (ca) | 40S ribosomal protein eS8 | polymer | 225 | 25341.1 | 1 | UniProt (A0A3B6AYT7) Pfam (PF01201) | Triticum aestivum (bread wheat) | 40S ribosomal protein S8 |
| 4 | D (da) | 40S ribosomal protein eS10 | polymer | 188 | 20464.0 | 1 | UniProt (W5AUH7) Pfam (PF03501) | Triticum aestivum (bread wheat) | Plectin/S10 N-terminal domain-containing protein |
| 5 | E (ga) | 40S ribosomal protein uS12 | polymer | 142 | 15696.5 | 1 | UniProt (W5FV77) Pfam (PF00164) | Triticum aestivum (bread wheat) | 40S ribosomal protein S23 |
| 6 | F (ha) | RACK1 | polymer | 332 | 36200.5 | 1 | UniProt (W5D4F5) Pfam (PF00400) | Triticum aestivum (bread wheat) | WD_REPEATS_REGION domain-containing protein |
| 7 | G (ia) | 40S ribosomal protein uS3 | polymer | 227 | 25413.8 | 1 | UniProt (Q8L804) Pfam (PF07650) Pfam (PF00189) | Triticum aestivum (bread wheat) | Putative 40S ribosomal protein S3 |
| 8 | H (ja) | 40S ribosomal protein eS4 | polymer | 265 | 30008.1 | 1 | UniProt (A0A1D5SLI4) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Triticum aestivum (bread wheat) | 40S ribosomal protein S4 |
| 9 | I (ka) | 40S ribosomal protein uS7 | polymer | 200 | 22350.9 | 1 | UniProt (W5D067) UniProt (by SIFTS) (A0A9R1JSD6) | Triticum aestivum (bread wheat) | Ribosomal protein S7 domain-containing protein |
| 10 | J (la) | 40S ribosomal protein uS9 | polymer | 149 | 16871.0 | 1 | UniProt (A0A3B6HX49) Pfam (PF00380) | Triticum aestivum (bread wheat) | 40S ribosomal protein S16 |
| 11 | K (ma) | 40S ribosomal protein uS10 | polymer | 127 | 14128.4 | 1 | UniProt (U5HTD8) Pfam (PF00338) | Triticum aestivum (bread wheat) | Ribosomal protein S20 |
| 12 | L (na) | 40S ribosomal protein uS11 | polymer | 151 | 16398.8 | 1 | UniProt (A0A3B6SS17) Pfam (PF00411) | Triticum aestivum (bread wheat) | 40S ribosomal protein S14 |
| 13 | M (oa) | 40S ribosomal protein uS13 | polymer | 152 | 17702.7 | 1 | UniProt (Q8L806) Pfam (PF00416) | Triticum aestivum (bread wheat) | Putative ribosomal protein S18 |
| 14 | N (pa) | 40S ribosomal protein uS15 | polymer | 151 | 17102.3 | 1 | UniProt (Q5XUU9) Pfam (PF08069) Pfam (PF00312) | Triticum aestivum (bread wheat) | Cytoplasmatic ribosomal protein S13 |
| 15 | O (qa) | 40S ribosomal protein eS17 | polymer | 143 | 16523.1 | 1 | UniProt (A0A3B5YWZ3) Pfam (PF00833) | Triticum aestivum (bread wheat) | |
| 16 | P (ra) | 40S ribosomal protein eS19 | polymer | 155 | 17097.6 | 1 | UniProt (W5FWF5) Pfam (PF01090) | Triticum aestivum (bread wheat) | 40S ribosomal protein S19 |
| 17 | Q (sa) | 40S ribosomal protein uS19 | polymer | 154 | 17424.6 | 1 | UniProt (W5ASA4) Pfam (PF00203) | Triticum aestivum (bread wheat) | Genome assembly, chromosome: II |
| 18 | R (ta) | 40S ribosomal protein eS25 | polymer | 108 | 12094.2 | 1 | UniProt (W5EP45) Pfam (PF03297) | Triticum aestivum (bread wheat) | 40S ribosomal protein S25 |
| 19 | S (ua) | 40S ribosomal protein eS28 | polymer | 86 | 9815.3 | 1 | UniProt (Q7X9K4) Pfam (PF01200) | Triticum aestivum (bread wheat) | S28 ribosomal protein (Fragment) |
| 20 | T (va) | 40S ribosomal protein uS8 | polymer | 129 | 14924.3 | 1 | UniProt (A0A077RZD1) Pfam (PF00410) | Triticum aestivum (bread wheat) | 30S ribosomal protein S8, chloroplastic |
| 21 | U (wa) | 40S ribosomal protein uS14 | polymer | 56 | 6391.5 | 1 | UniProt (A0A3B6LU46) Pfam (PF00253) UniProt (by SIFTS) (Q5I7K3) | Triticum aestivum (bread wheat) | 40S ribosomal protein S29 |
| 22 | V (xa) | 40S ribosomal protein eS27 | polymer | 86 | 9583.2 | 1 | UniProt (W5HZ68) Pfam (PF01667) | Triticum aestivum (bread wheat) | 40S ribosomal protein S27 |
| 23 | W (ya) | 40S ribosomal protein eS30 | polymer | 62 | 6934.2 | 1 | UniProt (A0A3B6S9M7) Pfam (PF04758) | Triticum aestivum (bread wheat) | 40S ribosomal protein S30 |
| 24 | X (za) | 40S ribosomal protein uS2 | polymer | 308 | 33300.4 | 1 | UniProt (W5E2W7) Pfam (PF00318) | Triticum aestivum (bread wheat) | 40S ribosomal protein SA |
| 25 | Y (bb) | 40S ribosomal protein eS1 | polymer | 263 | 30044.0 | 1 | UniProt (A0A3B6IU74) Pfam (PF01015) | Triticum aestivum (bread wheat) | 40S ribosomal protein S3a |
| 26 | Z (cb) | 40S ribosomal protein eS21 | polymer | 82 | 9194.3 | 1 | UniProt (W5EL62) Pfam (PF01249) | Triticum aestivum (bread wheat) | 40S ribosomal protein S21 |
| 27 | AA (db) | 40S ribosomal protein eS26 | polymer | 156 | 16576.2 | 1 | UniProt (A0A3B6LWE1) Pfam (PF01283) | Triticum aestivum (bread wheat) | 40S ribosomal protein S26 |
| 28 | BA (eb) | 40S ribosomal protein uS4 | polymer | 195 | 22534.1 | 1 | UniProt (W5FPA7) Pfam (PF00163) Pfam (PF01479) | Triticum aestivum (bread wheat) | 30S ribosomal protein S4, chloroplastic |
| 29 | CA (fb) | 40S ribosomal protein uS5 | polymer | 274 | 29996.0 | 1 | UniProt (A0A3B6LVN2) Pfam (PF00333) Pfam (PF03719) | Triticum aestivum (bread wheat) | S5 DRBM domain-containing protein |
| 30 | DA (gb) | 40S ribosomal protein eS6 | polymer | 250 | 28488.6 | 1 | UniProt (A0A2X0SLI3) Pfam (PF01092) | Triticum aestivum (bread wheat) | 40S ribosomal protein S6 |
| 31 | EA (hb) | 40S ribosomal protein eS7 | polymer | 192 | 22297.9 | 1 | UniProt (Q5I7K2) Pfam (PF01251) | Triticum aestivum (bread wheat) | 40S ribosomal protein S7 |
| 32 | FA (ib) | 40S ribosomal protein uS17 | polymer | 159 | 17841.1 | 1 | UniProt (W5BFB7) Pfam (PF16205) Pfam (PF00366) | Triticum aestivum (bread wheat) | 40S ribosomal protein S11 N-terminal domain-containing protein |
| 33 | GA (AA) | 40S ribosomal protein eL8 | polymer | 258 | 29407.2 | 1 | UniProt (A0A3B6RED0) Pfam (PF01248) | Triticum aestivum (bread wheat) | 60S ribosomal protein L7a |
| 34 | HA (BA) | 60S ribosomal protein eL21 | polymer | 164 | 18719.8 | 1 | UniProt (F4YWL9) UniProt (by SIFTS) (A0A9R1HBE9) | Triticum aestivum (bread wheat) | 60S ribosomal protein L21 |
| 35 | IA (CA) | 60S ribosomal protein eL27 | polymer | 137 | 15615.7 | 1 | UniProt (A0A341XZK6) Pfam (PF00467) Pfam (PF01777) | Triticum aestivum (bread wheat) | 60S ribosomal protein L27 |
| 36 | JA (DA) | 60S ribosomal protein uL2 | polymer | 261 | 28251.5 | 1 | UniProt (W5ECL2) Pfam (PF00181) Pfam (PF03947) | Triticum aestivum (bread wheat) | Ribosomal protein L2 C-terminal domain-containing protein |
| 37 | KA (EA) | 60S ribosomal protein uL5 | polymer | 180 | 20725.1 | 1 | UniProt (A0A3B5XX39) Pfam (PF00281) Pfam (PF00673) | Triticum aestivum (bread wheat) | 60S ribosomal protein L11 |
| 38 | LA (FA) | 60S ribosomal protein uL6 | polymer | 189 | 21329.9 | 1 | UniProt (W5I5G5) Pfam (PF00347) | Triticum aestivum (bread wheat) | Ribosomal protein L6 alpha-beta domain-containing protein |
| 39 | MA (GA) | 60S ribosomal protein uL14 | polymer | 140 | 15040.9 | 1 | UniProt (Q5I7K4) Pfam (PF00238) | Triticum aestivum (bread wheat) | Ribosomal protein L17 |
| 40 | NA (HA) | 60S ribosomal protein eL15 | polymer | 204 | 24488.7 | 1 | UniProt (W5FEX7) Pfam (PF00827) | Triticum aestivum (bread wheat) | Ribosomal protein L15 |
| 41 | OA (IA) | 60S ribosomal protein uL15 | polymer | 145 | 16055.0 | 1 | UniProt (A0A3B6DCS5) Pfam (PF00828) | Triticum aestivum (bread wheat) | Ribosomal protein L18e/L15P domain-containing protein |
| 42 | PA (JA) | 60S ribosomal protein eL18 | polymer | 187 | 21292.2 | 1 | UniProt (A0A3B6ATQ1) Pfam (PF17135) | Triticum aestivum (bread wheat) | Ribosomal protein L18e/L15P domain-containing protein |
| 43 | QA (KA) | 60S ribosomal protein uL18 | polymer | 301 | 34486.1 | 1 | UniProt (W5BZZ2) Pfam (PF17144) Pfam (PF14204) | Triticum aestivum (bread wheat) | Ribosomal protein L5 eukaryotic C-terminal domain-containing protein |
| 44 | RA (LA) | 60S ribosomal protein eL19 | polymer | 213 | 24692.4 | 1 | UniProt (A0A3B6DA12) Pfam (PF01280) | Triticum aestivum (bread wheat) | Ribosomal protein L19 |
| 45 | SA (MA) | 60S ribosomal protein uL22 | polymer | 170 | 19525.5 | 1 | UniProt (W5FSM8) Pfam (PF00237) | Triticum aestivum (bread wheat) | |
| 46 | TA (NA) | 60S ribosomal protein uL23 | polymer | 152 | 16920.2 | 1 | UniProt (A0A1D5UQZ5) Pfam (PF03939) Pfam (PF00276) | Triticum aestivum (bread wheat) | Genome assembly, chromosome: II |
| 47 | UA (OA) | 60S ribosomal protein eL24 | polymer | 162 | 18450.8 | 1 | UniProt (W5CDW4) Pfam (PF01246) | Triticum aestivum (bread wheat) | TRASH domain-containing protein |
| 48 | VA (PA) | 60S ribosomal protein uL24 | polymer | 157 | 17585.5 | 1 | UniProt (A0A3B6GQI2) Pfam (PF16906) Pfam (PF00467) | Triticum aestivum (bread wheat) | KOW domain-containing protein |
| 49 | WA (QA) | 60S ribosomal protein eL28 | polymer | 147 | 16607.4 | 1 | UniProt (A0A3B5ZZN9) Pfam (PF01778) | Triticum aestivum (bread wheat) | Ribosomal L28e/Mak16 domain-containing protein |
| 50 | XA (RA) | 60S ribosomal protein eL30 | polymer | 112 | 12372.5 | 1 | UniProt (W4ZRU3) Pfam (PF01248) UniProt (by SIFTS) (Q5I7K9) | Triticum aestivum (bread wheat) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein |
| 51 | YA (SA) | 60S ribosomal protein eL31 | polymer | 123 | 14152.4 | 1 | UniProt (W5G990) Pfam (PF01198) | Triticum aestivum (bread wheat) | 60S ribosomal protein L31 |
| 52 | ZA (TA) | 60S ribosomal protein eL32 | polymer | 133 | 15737.6 | 1 | UniProt (A0A3B6SDD9) Pfam (PF01655) | Triticum aestivum (bread wheat) | |
| 53 | AB (UA) | 60S ribosomal protein eL37 | polymer | 93 | 10765.6 | 1 | UniProt (A0A1D6BC85) Pfam (PF01907) | Triticum aestivum (bread wheat) | Ribosomal protein L37 |
| 54 | BB (VA) | 60S ribosomal protein eL39 | polymer | 76 | 9439.1 | 1 | UniProt (M7ZU91) Pfam (PF00832) UniProt (by SIFTS) (Q5I7K7) | Triticum aestivum (bread wheat) | 60S ribosomal protein L39 |
| 55 | CB (WA) | 60S ribosomal protein eL42 | polymer | 105 | 12139.4 | 1 | UniProt (W5HX73) Pfam (PF00935) | Triticum aestivum (bread wheat) | Genome assembly, chromosome: II |
| 56 | DB (XA) | 60S ribosomal protein eL14 | polymer | 135 | 15490.5 | 1 | UniProt (A0A3B6DGT8) Pfam (PF01929) | Triticum aestivum (bread wheat) | Ribosomal protein L14e domain-containing protein |
| 57 | EB (YA) | 60S ribosomal protein eL20 | polymer | 178 | 21380.1 | 1 | UniProt (W5D7B8) Pfam (PF01775) | Triticum aestivum (bread wheat) | 60S ribosomal protein L18a |
| 58 | FB (ZA) | 60S ribosomal protein eL22 | polymer | 130 | 14503.6 | 1 | UniProt (A0A3B6C0D4) Pfam (PF01776) | Triticum aestivum (bread wheat) | |
| 59 | GB (AB) | 60S ribosomal protein eL36 | polymer | 112 | 12563.0 | 1 | UniProt (Q5I7L5) UniProt (by SIFTS) (A0A9R1H1R6) | Triticum aestivum (bread wheat) | 60S ribosomal protein L36 |
| 60 | HB (BB) | 60S ribosomal protein uL29 | polymer | 124 | 14401.0 | 1 | UniProt (Q8L805) Pfam (PF00831) | Triticum aestivum (bread wheat) | 60S ribosomal protein L35 |
| 61 | IB (CB) | 60S ribosomal protein uL30 | polymer | 244 | 28161.1 | 1 | UniProt (A0A3B6DM38) Pfam (PF08079) Pfam (PF00327) | Triticum aestivum (bread wheat) | |
| 62 | JB (DB) | 60S ribosomal protein uL3 | polymer | 389 | 44722.4 | 1 | UniProt (Q7X748) Pfam (PF00297) | Triticum aestivum (bread wheat) | Ribosomal protein L3 |
| 63 | KB (EB) | 60S ribosomal protein uL4 | polymer | 404 | 44285.4 | 1 | UniProt (A0A3B5ZXX7) Pfam (PF00573) Pfam (PF14374) | Triticum aestivum (bread wheat) | 60S ribosomal protein L4 C-terminal domain-containing protein |
| 64 | LB (FB) | 60S ribosomal protein uL13 | polymer | 206 | 23581.2 | 1 | UniProt (Q5I7L1) Pfam (PF00572) | Triticum aestivum (bread wheat) | Ribosomal protein L13a |
| 65 | MB (GB) | 60S ribosomal protein eL43 | polymer | 92 | 10266.1 | 1 | UniProt (D8L9P6) Pfam (PF01780) | Triticum aestivum (bread wheat) | 60S ribosomal protein L37a, expressed |
| 66 | NB (HB) | 60S ribosomal protein uL16 | polymer | 217 | 24516.9 | 1 | UniProt (A0A3B6HUM3) Pfam (PF00252) | Triticum aestivum (bread wheat) | Ribosomal protein L10e/L16 domain-containing protein |
| 67 | OB (IB) | 60S ribosomal protein eL41 | polymer | 25 | 3445.4 | 1 | UniProt (P62125) Pfam (PF05162) | Oryza sativa (rice) | 60S ribosomal protein L41 |
| 68 | PB (JB) | 60S ribosomal protein eL40 | polymer | 129 | 14828.4 | 1 | UniProt (A0A1D5XNC2) Pfam (PF00240) Pfam (PF01020) | Triticum aestivum (bread wheat) | Ubiquitin-like domain-containing protein |
| 69 | QB (KB) | 60S ribosomal protein eL13 | polymer | 208 | 24185.4 | 1 | UniProt (A0A3B6NJZ9) Pfam (PF01294) | Triticum aestivum (bread wheat) | 60S ribosomal protein L13 |
| 70 | RB (LB) | 60S ribosomal protein eL6 | polymer | 219 | 24575.7 | 1 | UniProt (A0A3B6QGW3) Pfam (PF01159) | Triticum aestivum (bread wheat) | 60S ribosomal protein L6 |
| 71 | SB (MB) | 60S ribosomal protein eL33 | polymer | 112 | 12704.7 | 1 | UniProt (A0A0C4BK99) Pfam (PF01247) | Triticum aestivum (bread wheat) | |
| 72 | TB (NB) | 60S ribosomal protein eL38 | polymer | 69 | 8067.6 | 1 | UniProt (A0A1D5W6Q2) Pfam (PF01781) | Triticum aestivum (bread wheat) | 60S ribosomal protein L38 |
| 73 | UB (OB) | 60S ribosomal protein eL29 | polymer | 60 | 6994.1 | 1 | UniProt (A0A1D5RRD3) Pfam (PF01779) | Triticum aestivum (bread wheat) | 60S ribosomal protein L29 |
| 74 | VB (PB) | 60S ribosomal protein eL34 | polymer | 119 | 13798.4 | 1 | UniProt (A0A3B6RFY8) Pfam (PF01199) | Triticum aestivum (bread wheat) | 60S ribosomal protein L34 |
| 75 | WB (RB) | 60S ribosomal RNA | polymer | 3386 | 1095659.0 | 1 | Triticum aestivum (wheat) | ||
| 76 | XB (SB) | 5.8S ribosomal RNA | polymer | 160 | 51535.6 | 1 | Triticum aestivum (wheat) | ||
| 77 | YB (TB) | 5S ribosomal RNA | polymer | 120 | 38717.0 | 1 | Triticum aestivum (wheat) | ||
| 78 | ZB (al) | mRNA | polymer | 7 | 2229.4 | 1 | Triticum aestivum (wheat) | ||
| 79 | AC (cl) | tRNAi | polymer | 75 | 24446.9 | 1 | Triticum aestivum (wheat) | ||
| 80 | AD, AE, AF, AG, AH... (aa, KB, RB, PB, TB...) | MAGNESIUM ION | non-polymer | 24.3 | 265 | Chemie (MG) | |||
| 81 | RE, SE, WE, ZE (wa, db, WA, GB) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 82 | HM (RB) | 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione | non-polymer | 281.3 | 1 | Chemie (3HE) |
Sequence modifications
aa: 1 - 1810 (GenBank: 2123606567)
NB: 1 - 69 (UniProt: A0A1D5W6Q2)
| PDB | External Database | Details |
|---|---|---|
| - | G 1183 | deletion |
| G 1399 | C 1400 | conflict |
| C 1411 | G 1412 | conflict |
| C 1441 | G 1442 | conflict |
| C 1762 | G 1763 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Phe 48 | His 48 | conflict |
| Ala 50 | Thr 50 | conflict |
| Ser 65 | Asn 65 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 79 |
| Total formula weight | 3186951.3 | |
| Non-Polymers* | Number of molecules | 270 |
| Total formula weight | 6983.8 | |
| All* | Total formula weight | 3193935.1 |
