8IHP
Structure of Semliki Forest virus VLP in complex with the receptor VLDLR-LA3
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G, J (A, D, G, J) | Spike glycoprotein E2 | polymer | 422 | 46870.3 | 4 | UniProt (P03315) Pfam (PF00943) | Semliki Forest virus (SFV) | E2 envelope glycoprotein |
| 2 | B, E, H, K (B, E, H, K) | Spike glycoprotein E1 | polymer | 438 | 47489.8 | 4 | UniProt (P03315) Pfam (PF01589) | Semliki Forest virus (SFV) | E1 envelope glycoprotein |
| 3 | C, F, I, L (C, F, I, L) | Capsid protein | polymer | 162 | 17848.3 | 4 | UniProt (P03315) Pfam (PF00944) | Semliki Forest virus (SFV) | Coat protein,C |
| 4 | M, N, O (M, N, O) | Very low-density lipoprotein receptor | polymer | 39 | 4361.7 | 3 | UniProt (P98155) Pfam (PF00057) | Homo sapiens (human) | VLDL receptor,VLDL-R |
| 5 | AA, P, Q, R, S... (K, A, B, D, E...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 12 | Chemie (NAG) | |||
| 6 | BA, CA, DA (M, N, O) | CALCIUM ION | non-polymer | 40.1 | 3 | Chemie (CA) PubChem (271) |
Sequence modifications
A, D, G, J: 1 - 422 (UniProt: P03315)
B, E, H, K: 1 - 438 (UniProt: P03315)
| PDB | External Database | Details |
|---|---|---|
| Lys 162 | Glu 495 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Asp 323 | Asn 1138 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 15 |
| Total formula weight | 461918.6 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 2774.7 | |
| All* | Total formula weight | 464693.3 |
