8IFZ
Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 spike protein receptor-binding domain in complex with white-tailed deer ACE2
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | B | Spike protein S1 | polymer | 238 | 26933.8 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
2 | A | Angiotensin-converting enzyme | polymer | 661 | 76530.5 | 1 | UniProt (A0A6J0Z472) Pfam (PF01401) In PDB | Odocoileus virginianus (white-tailed deer) | |
3 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) | |||
4 | A | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
B: 319 - 541 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met 304 | - | initiating methionine |
Phe 305 | - | expression tag |
Val 306 | - | expression tag |
Phe 307 | - | expression tag |
Leu 308 | - | expression tag |
Val 309 | - | expression tag |
Leu 310 | - | expression tag |
Leu 311 | - | expression tag |
Pro 312 | - | expression tag |
Leu 313 | - | expression tag |
Val 314 | - | expression tag |
Ser 315 | - | expression tag |
Ser 316 | - | expression tag |
Gln 317 | - | expression tag |
Cys 318 | - | expression tag |
Asp 339 | Gly 339 | variant |
Phe 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Ala 376 | Thr 376 | variant |
Asn 405 | Asp 405 | variant |
Ser 408 | Arg 408 | variant |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Arg 452 | Leu 452 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Val 486 | Phe 486 | variant |
Arg 498 | Gln 498 | variant |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 103464.2 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 1171.4 | |
All* | Total formula weight | 104635.7 |