8IF1
Complex structure of HLA2402 with recognizing SARS-CoV-2 Y453F epitope NYNYLFRLF
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, G | MHC class I antigen | polymer | 308 | 35437.1 | 3 | UniProt (D9UAY1) Pfam (PF00129) Pfam (PF07654) In PDB | Homo sapiens (human) | |
2 | B, D, H | Beta-2-microglobulin | polymer | 101 | 11994.4 | 3 | UniProt (P61769) Pfam (PF07654) In PDB | Homo sapiens (human) | |
3 | E, F, I | Spike protein S1 | polymer | 9 | 1250.4 | 3 | UniProt (P0DTC2) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
4 | water | water | 18.0 | 4 | Chemie (HOH) |
Sequence modifications
A, C, G: 1 - 276 (UniProt: D9UAY1)
B, D, H: 1 - 99 (UniProt: P61769)
E, F, I: 1 - 9 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met -4 | - | initiating methionine |
Asn -3 | - | expression tag |
Ser -2 | - | expression tag |
Val -1 | - | expression tag |
Asp 0 | - | expression tag |
Gly 277 | - | expression tag |
Ser 278 | - | expression tag |
Gly 279 | - | expression tag |
Leu 280 | - | expression tag |
Asn 281 | - | expression tag |
Asp 282 | - | expression tag |
Ile 283 | - | expression tag |
Phe 284 | - | expression tag |
Glu 285 | - | expression tag |
Ala 286 | - | expression tag |
Gln 287 | - | expression tag |
Lys 288 | - | expression tag |
Ile 289 | - | expression tag |
Glu 290 | - | expression tag |
Trp 291 | - | expression tag |
His 292 | - | expression tag |
Ala 293 | - | expression tag |
Ala 294 | - | expression tag |
Ala 295 | - | expression tag |
Leu 296 | - | expression tag |
Glu 297 | - | expression tag |
His 298 | - | expression tag |
His 299 | - | expression tag |
His 300 | - | expression tag |
His 301 | - | expression tag |
His 302 | - | expression tag |
His 303 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Asp -1 | - | expression tag |
Met 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Phe 6 | Tyr 453 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 146045.8 | |
All* | Total formula weight | 146045.8 |