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8IDY

human nuclear pre-60S ribosomal particle - State F

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(5)
5S rRNApolymer12038691.91GenBank (NR_023363)Homo sapiens (human)
2B
(6)
Eukaryotic translation initiation factor 6polymer24526620.01UniProt (P56537)
Pfam (PF01912)
Homo sapiens (human)eIF-6,B(2)GCN homolog,B4 integrin interactor,CAB,p27(BBP)
3C
(7)
Probable ribosome biogenesis protein RLP24polymer16319666.31UniProt (Q9UHA3)
Pfam (PF01246)
Homo sapiens (human)Ribosomal L24 domain-containing protein 1,Ribosomal protein L24-like
4D
(8)
5.8S rRNApolymer15650157.71GenBank (KY962518)Homo sapiens (human)
5E
(9)
Zinc finger protein 593polymer13415230.21UniProt (O00488)
Pfam (PF12171)
Homo sapiens (human)Zinc finger protein T86
6F
(B)
60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
Homo sapiens (human)Large ribosomal subunit protein uL3
7G
(C)
60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
Homo sapiens (human)Large ribosomal subunit protein eL29
8H
(D)
60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
Homo sapiens (human)Large ribosomal subunit protein uL4
9I
(E)
60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL30
10J
(F)
60S ribosomal protein L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
Homo sapiens (human)Large ribosomal subunit protein eL34
11K
(G)
60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL8
12L
(H)
60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
Homo sapiens (human)Large ribosomal subunit protein uL29
13M
(I)
60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
Homo sapiens (human)Large ribosomal subunit protein uL6
14N
(K)
60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
Homo sapiens (human)Large ribosomal subunit protein eL36
15O
(L)
60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
Homo sapiens (human)Large ribosomal subunit protein uL15
16P
(M)
60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
Homo sapiens (human)Large ribosomal subunit protein eL37
17Q
(N)
60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
Homo sapiens (human)Large ribosomal subunit protein uL5
18R
(O)
60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
Homo sapiens (human)Large ribosomal subunit protein eL38
19S
(P)
60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
Homo sapiens (human)Large ribosomal subunit protein eL39
20T
(Q)
60S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
Homo sapiens (human)Large ribosomal subunit protein eL13
21U
(S)
60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
Homo sapiens (human)Large ribosomal subunit protein eL14
22V
(U)
60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
Homo sapiens (human)Large ribosomal subunit protein eL15
23W
(V)
60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
Homo sapiens (human)Large ribosomal subunit protein uL13
24X
(W)
60S ribosomal protein L36apolymer10612477.01UniProt (P83881)
Pfam (PF00935)
Homo sapiens (human)Large ribosomal subunit protein eL42
25Y
(X)
60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
Homo sapiens (human)Large ribosomal subunit protein eL43
26Z
(Z)
60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (human)Large ribosomal subunit protein eL18
27AA
(a)
60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
Homo sapiens (human)Large ribosomal subunit protein eL19
28BA
(b)
60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (human)Large ribosomal subunit protein eL20
29CA
(c)
60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
Homo sapiens (human)Large ribosomal subunit protein eL21
30DA
(e)
60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
Homo sapiens (human)Large ribosomal subunit protein uL14
31EA
(g)
60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
Homo sapiens (human)Large ribosomal subunit protein uL23
32FA
(h)
60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
Homo sapiens (human)Large ribosomal subunit protein uL24
33GA
(i)
60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
Homo sapiens (human)Large ribosomal subunit protein eL27
34HA
(l)
60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
Homo sapiens (human)Large ribosomal subunit protein eL28
35IA
(m)
60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (human)Large ribosomal subunit protein uL2
36JA
(n)
60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
Homo sapiens (human)Large ribosomal subunit protein eL33
37KA
(o)
60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
Homo sapiens (human)Large ribosomal subunit protein eL6
38LA
(p)
60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
Homo sapiens (human)Large ribosomal subunit protein uL30
39MA
(r)
60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
Homo sapiens (human)Large ribosomal subunit protein uL18
40NA
(A)
G Protein Nucleolar 2polymer73183796.11UniProt (Q13823)
Pfam (PF08153)
Pfam (PF01926)
Homo sapiens (human)Autoantigen NGP-1
41OA
(R)
Translation machinery-associated protein 16polymer20323912.41UniProt (Q96EY4)
Pfam (PF11176)
Homo sapiens (human)
42PA
(J)
mRNA turnover protein 4 homologpolymer23927602.51UniProt (Q9UKD2)
Pfam (PF00466)
Pfam (PF17777)
Homo sapiens (human)Ribosome assembly factor MRTO4
43QA
(T)
Leydig cell tumor 10 kDa protein homologpolymer9910605.71UniProt (Q9UNZ5)
Pfam (PF09495)
Homo sapiens (human)
44RA
(2)
28S rRNApolymer50541636666.91Homo sapiens (human)
45SA
(y)
60S ribosomal protein L12polymer16517847.61UniProt (P30050)
Pfam (PF03946)
Pfam (PF00298)
Homo sapiens (human)Large ribosomal subunit protein uL11
46TA
(4)
GTP-binding protein 4polymer63474107.81UniProt (Q9BZE4)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
Homo sapiens (human)Chronic renal failure gene protein,GTP-binding protein NGB
47UA
(d)
60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
Homo sapiens (human)Large ribosomal subunit protein eL22
48VA
(j)
60S ribosomal protein L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
Homo sapiens (human)Large ribosomal subunit protein eL31
49WA
(k)
60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
Homo sapiens (human)Large ribosomal subunit protein eL32
50XA
(Y)
60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
Homo sapiens (human)Large ribosomal subunit protein uL22
51YA
(z)
Protein LLP homologpolymer12915268.41UniProt (Q9BRT6)
Pfam (PF10169)
Homo sapiens (human)Protein LAPS18-like
52ZA
(t)
60S ribosomal protein L10apolymer21724879.41UniProt (P62906)
Pfam (PF00687)
Homo sapiens (human)Large ribosomal subunit protein uL1
53AB
(u)
Protein SDA1 homologpolymer68780005.51UniProt (Q9NVU7)
Pfam (PF08158)
Pfam (PF05285)
Pfam (PF21638)
Homo sapiens (human)Nucleolar protein 130,SDA1 domain-containing protein 1,hSDA
54BB
(v)
Ribosome biogenesis protein NSA2 homologpolymer26030136.71UniProt (O95478)
Pfam (PF01201)
Homo sapiens (human)Hairy cell leukemia protein 1,TGF-beta-inducible nuclear protein 1
55CB
(A)
GUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
56DB
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
57EB
(A)
POTASSIUM IONnon-polymer39.11Chemie (K)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains54
Total formula weight2943115.0
Non-Polymers*Number of molecules3
Total formula weight506.6
All*Total formula weight2943621.6
*Water molecules are not included.

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PDB entries from 2025-06-11

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