8I9H
S-RBD (Omicron XBB.1) in complex with PD of ACE2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Processed angiotensin-converting enzyme 2 | polymer | 616 | 71043.0 | 1 | UniProt (Q9BYF1) Pfam (PF01401) In PDB | Homo sapiens (human) | |
| 2 | E | Spike protein S2' | polymer | 223 | 25149.5 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
| 3 | B, C, D, F, G... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) |
Sequence modifications
A: 19 - 615 (UniProt: Q9BYF1)
E: 319 - 541 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
| Gly 1 | - | expression tag |
| Val 2 | - | expression tag |
| Lys 3 | - | expression tag |
| Val 4 | - | expression tag |
| Leu 5 | - | expression tag |
| Phe 6 | - | expression tag |
| Ala 7 | - | expression tag |
| Leu 8 | - | expression tag |
| Ile 9 | - | expression tag |
| Cys 10 | - | expression tag |
| Ile 11 | - | expression tag |
| Ala 12 | - | expression tag |
| Val 13 | - | expression tag |
| Ala 14 | - | expression tag |
| Glu 15 | - | expression tag |
| Ala 16 | - | expression tag |
| Gly 17 | - | expression tag |
| Thr 18 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| His 339 | Gly 339 | variant |
| Thr 346 | Arg 346 | variant |
| Ile 368 | Leu 368 | variant |
| Phe 371 | Ser 371 | variant |
| Pro 373 | Ser 373 | variant |
| Phe 375 | Ser 375 | variant |
| Ala 376 | Thr 376 | variant |
| Asn 405 | Asp 405 | variant |
| Ser 408 | Arg 408 | variant |
| Asn 417 | Lys 417 | variant |
| Lys 440 | Asn 440 | variant |
| Pro 445 | Val 445 | variant |
| Ser 446 | Gly 446 | variant |
| Lys 460 | Asn 460 | variant |
| Asn 477 | Ser 477 | variant |
| Lys 478 | Thr 478 | variant |
| Ala 484 | Glu 484 | variant |
| Ser 486 | Phe 486 | variant |
| Ser 490 | Phe 490 | variant |
| Arg 498 | Gln 498 | variant |
| Tyr 501 | Asn 501 | variant |
| His 505 | Tyr 505 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 96192.5 | |
| Branched | Number of molecules | 6 |
| Total formula weight | 2546.4 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 221.2 | |
| All* | Total formula weight | 98960.2 |
