8I5H
Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G (R, A, D) | Spike protein S1 | polymer | 194 | 21844.5 | 3 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | B, E, H (H, B, E) | Fab Heavy chain | polymer | 230 | 24611.6 | 3 | Homo sapiens | ||
| 3 | C, F, I (L, C, F) | Fab Light chain | polymer | 215 | 23276.9 | 3 | Homo sapiens | ||
| 4 | J, K, L (R, A, D) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
| 5 | M, N, O, P, Q... (R, H, L, A, B...) | water | water | 18.0 | 296 | Chemie (HOH) |
Sequence modifications
R, A, D: 334 - 527 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Arg 452 | Leu 452 | variant |
| Lys 478 | Thr 478 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 209199.0 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 663.6 | |
| All* | Total formula weight | 209862.6 |
