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8I0W

The cryo-EM structure of human C complex

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1APre-mRNA-processing-splicing factor 8polymer2335273974.31UniProt (Q6P2Q9)
Pfam (PF08082)
Pfam (PF08083)
Pfam (PF10598)
Pfam (PF10597)
Pfam (PF10596)
Pfam (PF12134)
Pfam (PF01398)
Pfam (PF08084)
In PDB
Homo sapiens (human)PRP8 homolog,Splicing factor Prp8
2BU5 snRNApolymer11737254.91GenBank (20330981)Homo sapiens (human)
3C116 kDa U5 small nuclear ribonucleoprotein componentpolymer972109560.61UniProt (Q15029)
Pfam (PF16004)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
In PDB
Homo sapiens (human)SNU114 homolog,hSNU114
4DU5 small nuclear ribonucleoprotein 200 kDa helicasepolymer2136244823.41UniProt (O75643)
Pfam (PF21188)
Pfam (PF18149)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF02889)
In PDB
Homo sapiens (human)BRR2,BRR2 homolog
5EU5 small nuclear ribonucleoprotein 40 kDa proteinpolymer35739359.51UniProt (Q96DI7)
Pfam (PF00400)
In PDB
Homo sapiens (human)SNR40,U5-40K,U5 snRNP-specific 40 kDa protein
6FU6 snRNApolymer10734404.41Homo sapiens
7Gpre-mRNApolymer4614729.81unidentified adenovirus
86pre-mRNApolymer17455660.71unidentified adenovirus
9HU2 snRNApolymer18860186.41GenBank (340097)Homo sapiens (human)
10IPre-mRNA-splicing factor SYF1polymer855100148.71UniProt (Q9HCS7)
Pfam (PF13181)
In PDB
Homo sapiens (human)
11JCrooked neck-like protein 1polymer848100610.01UniProt (Q9BZJ0)
Pfam (PF02184)
In PDB
Homo sapiens (human)SYF3,Crooked neck homolog,hCrn
12KPre-mRNA-splicing factor SPF27polymer22526163.41UniProt (O75934)
Pfam (PF05700)
In PDB
Homo sapiens (human)Spliceosome-associated protein SPF 27
13LCell division cycle 5-like proteinpolymer80292406.91UniProt (Q99459)
Pfam (PF13921)
Pfam (PF11831)
In PDB
Homo sapiens (human)Cdc5-like protein,Pombe cdc5-related protein
14MPre-mRNA-splicing factor SYF2polymer24328780.51UniProt (O95926)
Pfam (PF08231)
In PDB
Homo sapiens (human)CCNDBP1-interactor,p29
15NProtein BUD31 homologpolymer14417032.81UniProt (P41223)
Pfam (PF01125)
In PDB
Homo sapiens (human)Protein G10 homolog
16OPre-mRNA-splicing factor RBM22polymer42046959.61UniProt (Q9NW64)
Pfam (PF21369)
Pfam (PF00076)
In PDB
Homo sapiens (human)RNA-binding motif protein 22
17PSpliceosome-associated protein CWC15 homologpolymer22926674.41UniProt (Q9P013)
Pfam (PF04889)
In PDB
Homo sapiens (human)
18RSNW domain-containing protein 1polymer53661770.61UniProt (Q13573)
Pfam (PF02731)
In PDB
Homo sapiens (human)Nuclear protein SkiP,Nuclear receptor coactivator NCoA-62,Ski-interacting protein
19SPeptidyl-prolyl cis-trans isomerase-like 1polymer16618257.81UniProt (Q9Y3C6)
Pfam (PF00160)
In PDB
Homo sapiens (human)PPIase,Rotamase PPIL1
20TPleiotropic regulator 1polymer51457280.81UniProt (O43660)
Pfam (PF00400)
In PDB
Homo sapiens (human)
21QRNA helicase aquariuspolymer1485171502.51UniProt (O60306)
Pfam (PF16399)
Pfam (PF21143)
Pfam (PF21144)
Pfam (PF13086)
Pfam (PF13087)
In PDB
Homo sapiens (human)
22USerine/arginine repetitive matrix protein 2polymer2752300255.31UniProt (Q9UQ35)
Pfam (PF08312)
In PDB
Homo sapiens (human)Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa,Ser/Arg-related nuclear matrix protein of 300 kDa
23VPre-mRNA-splicing factor CWC22 homologpolymer908105646.61UniProt (Q9HCG8)
Pfam (PF02854)
Pfam (PF02847)
In PDB
Homo sapiens (human)
24WPre-mRNA-processing factor 17polymer57965612.21UniProt (O60508)
Pfam (PF00400)
In PDB
Homo sapiens (human)PRP17 homolog,hPRP17
25XPre-mRNA-splicing factor CWC25 homologpolymer42549769.91UniProt (Q9NXE8)
Pfam (PF10197)
Pfam (PF12542)
In PDB
Homo sapiens (human)Coiled-coil domain-containing protein 49
26YCoiled-coil domain-containing protein 94polymer32337141.81UniProt (Q9BW85)
Pfam (PF04502)
In PDB
Homo sapiens (human)
27ZPre-mRNA-splicing factor ATP-dependent RNA helicase PRP16polymer1227140720.61UniProt (Q92620)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF04408)
Pfam (PF21010)
Pfam (PF07717)
In PDB
Homo sapiens (human)
28q, r, s, tPre-mRNA-processing factor 19polymer50455245.54UniProt (Q9UMS4)
Pfam (PF04564)
Pfam (PF08606)
Pfam (PF00400)
In PDB
Homo sapiens (human)PRP19/PSO4 homolog,hPso4,RING-type E3 ubiquitin transferase PRP19,Senescence evasion factor
29uEukaryotic initiation factor 4A-IIIpolymer41146931.01UniProt (P38919)
Pfam (PF00271)
Pfam (PF00270)
In PDB
Homo sapiens (human)eIF4A-III,ATP-dependent RNA helicase eIF4A-3,Eukaryotic initiation factor 4A-like NUK-34,Eukaryotic translation initiation factor 4A isoform 3
30vProtein mago nashi homologpolymer14617189.61UniProt (P61326)
Pfam (PF02792)
In PDB
Homo sapiens (human)
31wRNA-binding protein 8Apolymer17419925.11UniProt (Q9Y5S9)
Pfam (PF00076)
In PDB
Homo sapiens (human)RNA-binding motif protein 8A,Ribonucleoprotein RBM8A
32xProtein CASC3polymer70376382.01UniProt (O15234)
Pfam (PF09405)
In PDB
Homo sapiens (human)Cancer susceptibility candidate gene 3 protein
33h, gSmall nuclear ribonucleoprotein Sm D3polymer12613940.32UniProt (P62318)
Pfam (PF01423)
In PDB
Homo sapiens (human)SmD3,Sm-D3,snRNP core protein D3
34i, aSmall nuclear ribonucleoprotein-associated proteins B and B'polymer24024642.12UniProt (P14678)
Pfam (PF01423)
In PDB
Homo sapiens (human)SmB,snRNP-B,Sm protein B/B',SmB/B'
35j, bSmall nuclear ribonucleoprotein Sm D1polymer11913310.72UniProt (P62314)
Pfam (PF01423)
In PDB
Homo sapiens (human)Sm-D1,Sm-D autoantigen,snRNP core protein D1
36k, cSmall nuclear ribonucleoprotein Sm D2polymer11813551.92UniProt (P62316)
Pfam (PF01423)
In PDB
Homo sapiens (human)Sm-D2,snRNP core protein D2
37m, dSmall nuclear ribonucleoprotein Fpolymer869734.22UniProt (P62306)
Pfam (PF01423)
In PDB
Homo sapiens (human)snRNP-F,Sm protein F,SmF
38l, eSmall nuclear ribonucleoprotein Epolymer9210817.62UniProt (P62304)
Pfam (PF01423)
In PDB
Homo sapiens (human)snRNP-E,Sm protein E,SmE
39n, fSmall nuclear ribonucleoprotein Gpolymer768508.12UniProt (P62308)
Pfam (PF01423)
In PDB
Homo sapiens (human)snRNP-G,Sm protein G,SmG
40oU2 small nuclear ribonucleoprotein A'polymer25528456.61UniProt (P09661)
Pfam (PF14580)
In PDB
Homo sapiens (human)U2-A',U2 snRNP A'
41pU2 small nuclear ribonucleoprotein B''polymer22525524.41UniProt (P08579)
Pfam (PF00076)
In PDB
Homo sapiens (human)U2-B",U2,U2 snRNP B''
42yPeptidyl-prolyl cis-trans isomerase Epolymer30133475.81UniProt (Q9UNP9)
Pfam (PF00076)
Pfam (PF00160)
In PDB
Homo sapiens (human)PPIase E,Cyclophilin E,Rotamase E
43zPre-mRNA-splicing factor ISY1 homologpolymer28533046.31UniProt (Q9ULR0)
Pfam (PF06246)
In PDB
Homo sapiens (human)
443Peptidylprolyl isomerase domain and WD repeat-containing protein 1polymer64673679.91UniProt (Q96BP3)
Pfam (PF00400)
Pfam (PF00160)
In PDB
Homo sapiens (human)Spliceosome-associated cyclophilin
454Corepressor interacting with RBPJ 1polymer45052441.81UniProt (Q86X95)
Pfam (PF10197)
In PDB
Homo sapiens (human)CBF1-interacting corepressor
461WD repeat-containing protein 70polymer65473306.21UniProt (Q9NW82)
Pfam (PF00400)
In PDB
Homo sapiens (human)
472Protein FRG1polymer25829227.51UniProt (Q14331)
Pfam (PF06229)
In PDB
Homo sapiens (human)FSHD region gene 1 protein
485UNKpolymer373178.91Homo sapiens
49AINOSITOL HEXAKISPHOSPHATEnon-polymer660.01Chemie (IHP)
50CGUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
51C, FMAGNESIUM IONnon-polymer24.35Chemie (MG)
52N, O, YZINC IONnon-polymer65.47Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight3239445.3
Non-Polymers*Number of molecules14
Total formula weight1762.6
All*Total formula weight3241207.9
*Water molecules are not included.

224572

PDB entries from 2024-09-04

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