8HWS
The complex structure of Omicron BA.4 RBD with BD604, S309, and S304
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Spike protein S2' | polymer | 196 | 22136.0 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | |
2 | H | BD-604 Fab Heavy chain | polymer | 229 | 24121.1 | 1 | Homo sapiens | ||
3 | L | BD-604 Fab Light chain | polymer | 215 | 23391.9 | 1 | Homo sapiens | ||
4 | D | S304 Fab Heavy Chain | polymer | 231 | 24613.4 | 1 | Homo sapiens | ||
5 | E | S304 Fab Light Chain | polymer | 216 | 23458.0 | 1 | Homo sapiens | ||
6 | I | S309 Fab Heavy Chain | polymer | 239 | 25586.6 | 1 | Homo sapiens | ||
7 | J | S309 Fab Light Chain | polymer | 215 | 23291.8 | 1 | Homo sapiens | ||
8 | B | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) |
Sequence modifications
A: 333 - 528 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Asp 339 | Gly 339 | variant |
Phe 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Ala 376 | Thr 376 | variant |
Asn 405 | Asp 405 | variant |
Ser 408 | Arg 408 | variant |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Arg 452 | Leu 452 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Val 486 | Phe 486 | variant |
Arg 498 | Gln 498 | variant |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 7 |
Total formula weight | 166598.8 | |
Branched | Number of molecules | 1 |
Total formula weight | 570.5 | |
All* | Total formula weight | 167169.3 |