8HL3
Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A23S) | 23s rRNA (3000-MER) | polymer | 3022 | 980552.3 | 1 | Sulfolobus acidocaldarius DSM 639 | ||
| 2 | B (A16S) | 16s rRNA (1493-MER) | polymer | 1503 | 487531.9 | 1 | Sulfolobus acidocaldarius DSM 639 | ||
| 3 | C (AEFG) | Elongation factor 2 | polymer | 729 | 81106.5 | 1 | UniProt (P23112) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) | Sulfolobus acidocaldarius DSM 639 | EF-2 |
| 4 | D (A5S) | 5s rRNA (122-MER) | polymer | 122 | 39440.5 | 1 | GenBank (68566501) | Sulfolobus acidocaldarius DSM 639 | |
| 5 | E (AL2P) | 50S ribosomal protein L2 | polymer | 234 | 24881.8 | 1 | UniProt (Q4JB43) Pfam (PF00181) Pfam (PF03947) | Sulfolobus acidocaldarius DSM 639 | |
| 6 | F (AL3P) | 50S ribosomal protein L3 | polymer | 339 | 38186.3 | 1 | UniProt (Q4JB40) Pfam (PF00297) | Sulfolobus acidocaldarius DSM 639 | |
| 7 | G (AL4P) | 50S ribosomal protein L4 | polymer | 251 | 27358.0 | 1 | UniProt (Q4JB41) Pfam (PF00573) | Sulfolobus acidocaldarius DSM 639 | |
| 8 | H (AL5P) | 50S ribosomal protein L5 | polymer | 168 | 19095.4 | 1 | UniProt (P41202) Pfam (PF00281) Pfam (PF00673) | Sulfolobus acidocaldarius DSM 639 | |
| 9 | I (AL6P) | 50S ribosomal protein L6 | polymer | 181 | 20305.7 | 1 | UniProt (O05637) Pfam (PF00347) | Sulfolobus acidocaldarius DSM 639 | |
| 10 | J (ALX0) | 50S ribosomal protein L18Ae | polymer | 76 | 8926.3 | 1 | UniProt (P38613) Pfam (PF01775) | Sulfolobus acidocaldarius DSM 639 | 50S ribosomal protein L20e,50S ribosomal protein LX |
| 11 | K (L10E) | 50S ribosomal protein L10e | polymer | 164 | 18670.0 | 1 | UniProt (Q4JC84) Pfam (PF00252) | Sulfolobus acidocaldarius DSM 639 | |
| 12 | L (L13P) | 50S ribosomal protein L13 | polymer | 140 | 15808.9 | 1 | UniProt (P39473) Pfam (PF00572) | Sulfolobus acidocaldarius DSM 639 | |
| 13 | M, N (L141, L142) | 50S ribosomal protein L14e | polymer | 86 | 9559.1 | 2 | UniProt (Q4JAJ9) Pfam (PF00467) | Sulfolobus acidocaldarius DSM 639 | |
| 14 | O (L14P) | 50S ribosomal protein L14 | polymer | 134 | 14707.1 | 1 | UniProt (Q4JB50) Pfam (PF00238) | Sulfolobus acidocaldarius DSM 639 | |
| 15 | P (L15E) | 50S ribosomal protein L15e | polymer | 169 | 20179.4 | 1 | UniProt (Q4JB20) Pfam (PF00827) | Sulfolobus acidocaldarius DSM 639 | |
| 16 | Q (L18E) | 50S ribosomal protein L18e | polymer | 112 | 12747.3 | 1 | UniProt (P39474) Pfam (PF17135) | Sulfolobus acidocaldarius DSM 639 | HL29e |
| 17 | R (L18P) | 50S ribosomal protein L18 | polymer | 193 | 21766.1 | 1 | UniProt (O05640) Pfam (PF17144) | Sulfolobus acidocaldarius DSM 639 | |
| 18 | S (L19E) | 50S ribosomal protein L19e | polymer | 144 | 17108.9 | 1 | UniProt (O05639) Pfam (PF01280) | Sulfolobus acidocaldarius DSM 639 | |
| 19 | T (L22P) | 50S ribosomal protein L22 | polymer | 150 | 17360.3 | 1 | UniProt (Q4JB45) Pfam (PF00237) | Sulfolobus acidocaldarius DSM 639 | |
| 20 | U (L23P) | 50S ribosomal protein L23 | polymer | 81 | 9262.0 | 1 | UniProt (Q4JB42) Pfam (PF00276) | Sulfolobus acidocaldarius DSM 639 | |
| 21 | V (L24E) | 50S ribosomal protein L24e | polymer | 54 | 6338.6 | 1 | UniProt (Q4JAV2) Pfam (PF01246) | Sulfolobus acidocaldarius DSM 639 | |
| 22 | W (L24P) | 50S ribosomal protein L24 | polymer | 122 | 14130.7 | 1 | UniProt (O05633) Pfam (PF16906) Pfam (PF00467) | Sulfolobus acidocaldarius DSM 639 | |
| 23 | X (L29P) | 50S ribosomal protein L29 | polymer | 63 | 7378.8 | 1 | UniProt (Q4JB47) Pfam (PF00831) | Sulfolobus acidocaldarius DSM 639 | |
| 24 | Y (L30E) | 50S ribosomal protein L30e | polymer | 94 | 10391.3 | 1 | UniProt (P11522) Pfam (PF01248) | Sulfolobus acidocaldarius DSM 639 | |
| 25 | Z (L30P) | 50S ribosomal protein L30 | polymer | 155 | 17819.7 | 1 | UniProt (O05642) Pfam (PF00327) | Sulfolobus acidocaldarius DSM 639 | |
| 26 | AA (L31E) | 50S ribosomal protein L31e | polymer | 75 | 8935.9 | 1 | UniProt (P38618) Pfam (PF01198) | Sulfolobus acidocaldarius DSM 639 | |
| 27 | BA (L32E) | 50S ribosomal protein L32e | polymer | 123 | 14328.1 | 1 | UniProt (O05638) Pfam (PF01655) | Sulfolobus acidocaldarius DSM 639 | |
| 28 | CA (L34E) | 50S ribosomal protein L34e | polymer | 77 | 8993.5 | 1 | UniProt (O05981) Pfam (PF01199) | Sulfolobus acidocaldarius DSM 639 | |
| 29 | DA (L37A) | 50S ribosomal protein L37Ae | polymer | 65 | 7536.9 | 1 | UniProt (Q4JB29) Pfam (PF01780) | Sulfolobus acidocaldarius DSM 639 | Ribosomal protein L43e |
| 30 | EA (L37E) | 50S ribosomal protein L37e | polymer | 54 | 6274.4 | 1 | UniProt (Q4JAZ9) Pfam (PF01907) | Sulfolobus acidocaldarius DSM 639 | |
| 31 | FA (L39E) | 50S ribosomal protein L39e | polymer | 49 | 5861.1 | 1 | UniProt (P13005) Pfam (PF00832) | Sulfolobus acidocaldarius DSM 639 | L46e |
| 32 | GA (L40E) | 50S ribosomal protein L40E | polymer | 55 | 6336.7 | 1 | UniProt (Q4JAP0) Pfam (PF01020) | Sulfolobus acidocaldarius DSM 639 | |
| 33 | HA (L44E) | 50S ribosomal protein L44e | polymer | 92 | 10806.0 | 1 | UniProt (Q4J9B2) Pfam (PF00935) | Sulfolobus acidocaldarius DSM 639 | |
| 34 | IA, JA, PB (L7A1, L7A2, SL7A) | 50S ribosomal protein L7Ae | polymer | 123 | 13351.5 | 3 | UniProt (Q4J8P1) Pfam (PF01248) | Sulfolobus acidocaldarius DSM 639 | Ribosomal protein L8e |
| 35 | KA (L15P) | 50S ribosomal protein L15 | polymer | 144 | 16476.1 | 1 | UniProt (O05643) Pfam (PF00828) | Sulfolobus acidocaldarius DSM 639 | |
| 36 | LA (L21E) | 50S ribosomal protein L21e | polymer | 97 | 11155.3 | 1 | UniProt (Q4JB11) Pfam (PF01157) | Sulfolobus acidocaldarius DSM 639 | |
| 37 | MA (L45A) | DUF2280 domain-containing protein | polymer | 101 | 11662.5 | 1 | UniProt (Q4J9G6) | Sulfolobus acidocaldarius DSM 639 | |
| 38 | NA (L46A) | Conserved protein | polymer | 70 | 8320.9 | 1 | UniProt (Q4J953) Pfam (PF18533) | Sulfolobus acidocaldarius DSM 639 | |
| 39 | OA (L47A) | 50S ribosomal protein L47A | polymer | 80 | 9276.7 | 1 | UniProt (F2Z6C4) | Sulfolobus acidocaldarius DSM 639 | |
| 40 | PA (AL1P) | 50S ribosomal protein L1 | polymer | 216 | 24416.6 | 1 | UniProt (P35024) Pfam (PF00687) | Sulfolobus acidocaldarius DSM 639 | |
| 41 | QA (AS2P) | 30S ribosomal protein S2 | polymer | 196 | 22474.0 | 1 | UniProt (P39478) Pfam (PF00318) | Sulfolobus acidocaldarius DSM 639 | |
| 42 | RA (AS4E) | 30S ribosomal protein S4e | polymer | 240 | 27340.0 | 1 | UniProt (O05634) Pfam (PF01479) Pfam (PF00900) | Sulfolobus acidocaldarius DSM 639 | |
| 43 | SA (AS4P) | 30S ribosomal protein S4 | polymer | 166 | 19440.6 | 1 | UniProt (P39467) Pfam (PF00163) Pfam (PF01479) | Sulfolobus acidocaldarius DSM 639 | |
| 44 | TA (AS5P) | 30S ribosomal protein S5 | polymer | 204 | 22782.7 | 1 | UniProt (O05641) Pfam (PF00333) Pfam (PF03719) | Sulfolobus acidocaldarius DSM 639 | |
| 45 | UA (AS6E) | 30S ribosomal protein S6e | polymer | 105 | 11479.4 | 1 | UniProt (Q4JAI1) Pfam (PF01092) | Sulfolobus acidocaldarius DSM 639 | |
| 46 | VA (AS8E) | 30S ribosomal protein S8e | polymer | 126 | 14113.2 | 1 | UniProt (Q4JAP5) Pfam (PF01201) | Sulfolobus acidocaldarius DSM 639 | |
| 47 | WA (AS8P) | 30S ribosomal protein S8 | polymer | 130 | 14624.2 | 1 | UniProt (O05636) Pfam (PF00410) | Sulfolobus acidocaldarius DSM 639 | |
| 48 | XA (S11P) | 30S ribosomal protein S11 | polymer | 128 | 13652.6 | 1 | UniProt (P39469) Pfam (PF00411) | Sulfolobus acidocaldarius DSM 639 | |
| 49 | YA (S12P) | 30S ribosomal protein S12 | polymer | 143 | 15703.6 | 1 | UniProt (P11524) Pfam (PF00164) | Sulfolobus acidocaldarius DSM 639 | |
| 50 | ZA (S15P) | 30S ribosomal protein S15 | polymer | 149 | 17438.4 | 1 | UniProt (Q4JAI3) Pfam (PF08069) Pfam (PF00312) | Sulfolobus acidocaldarius DSM 639 | |
| 51 | AB (S17P) | 30S ribosomal protein S17 | polymer | 111 | 12602.6 | 1 | UniProt (Q4JB49) Pfam (PF00366) | Sulfolobus acidocaldarius DSM 639 | |
| 52 | BB (S24E) | 30S ribosomal protein S24e | polymer | 96 | 10765.2 | 1 | UniProt (Q4JAF9) Pfam (PF01282) | Sulfolobus acidocaldarius DSM 639 | |
| 53 | CB (S27E) | 30S ribosomal protein S27e | polymer | 59 | 6577.0 | 1 | UniProt (Q4J9B1) Pfam (PF01667) | Sulfolobus acidocaldarius DSM 639 | |
| 54 | DB (S3AE) | 30S ribosomal protein S3Ae | polymer | 189 | 21876.6 | 1 | UniProt (Q4JB17) Pfam (PF01015) | Sulfolobus acidocaldarius DSM 639 | Ribosomal protein S1e |
| 55 | EB (AS3P) | 30S ribosomal protein S3 | polymer | 201 | 22396.5 | 1 | UniProt (Q4JB46) Pfam (PF07650) Pfam (PF00189) | Sulfolobus acidocaldarius DSM 639 | |
| 56 | FB (AS7P) | 30S ribosomal protein S7 | polymer | 193 | 21862.3 | 1 | UniProt (P17198) Pfam (PF00177) | Sulfolobus acidocaldarius DSM 639 | |
| 57 | GB (S10P) | 30S ribosomal protein S10 | polymer | 100 | 11775.9 | 1 | UniProt (P17199) Pfam (PF00338) | Sulfolobus acidocaldarius DSM 639 | |
| 58 | HB (S13P) | 30S ribosomal protein S13 | polymer | 147 | 17140.8 | 1 | UniProt (P39470) Pfam (PF00416) | Sulfolobus acidocaldarius DSM 639 | |
| 59 | IB (S14P) | 30S ribosomal protein S14 type Z | polymer | 52 | 6190.4 | 1 | UniProt (O05635) Pfam (PF00253) | Sulfolobus acidocaldarius DSM 639 | |
| 60 | JB (S17E) | 30S ribosomal protein S17e | polymer | 62 | 7336.4 | 1 | UniProt (Q4JAX5) Pfam (PF00833) | Sulfolobus acidocaldarius DSM 639 | |
| 61 | KB (S19E) | 30S ribosomal protein S19e | polymer | 150 | 17559.7 | 1 | UniProt (Q4J8U1) Pfam (PF01090) | Sulfolobus acidocaldarius DSM 639 | |
| 62 | LB (S19P) | 30S ribosomal protein S19 | polymer | 115 | 13800.4 | 1 | UniProt (Q4JB44) Pfam (PF00203) | Sulfolobus acidocaldarius DSM 639 | |
| 63 | MB (AS9P) | 30S ribosomal protein S9 | polymer | 136 | 15638.1 | 1 | UniProt (P39468) Pfam (PF00380) | Sulfolobus acidocaldarius DSM 639 | |
| 64 | NB (S28E) | 30S ribosomal protein S28e | polymer | 63 | 7094.3 | 1 | UniProt (Q4JAV1) Pfam (PF01200) | Sulfolobus acidocaldarius DSM 639 | |
| 65 | OB (S27A) | 30S ribosomal protein S27ae | polymer | 54 | 6261.4 | 1 | UniProt (Q4JAG0) Pfam (PF01599) | Sulfolobus acidocaldarius DSM 639 | |
| 66 | QB, RB (APTN, AETN) | tRNA (76-MER) | polymer | 76 | 24485.5 | 2 | Sulfolobus acidocaldarius DSM 639 | ||
| 67 | SB (AMRN) | mRNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | polymer | 13 | 3935.2 | 1 | Sulfolobus acidocaldarius DSM 639 | ||
| 68 | TB (APTP) | PHE-PHE-PHE-PHE-PHE-PHE | polymer | 6 | 901.1 | 1 | Sulfolobus acidocaldarius DSM 639 | ||
| 69 | UB (AEFG) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 1 | Chemie (GNP) | |||
| 70 | AC, AD, BC, BD, CC... (AS2P, AS5P, AS8P) | UNKNOWN | non-polymer | 103.1 | 57 | Chemie (UNK) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 72 |
| Total formula weight | 2572340.5 | |
| Non-Polymers* | Number of molecules | 58 |
| Total formula weight | 6400.0 | |
| All* | Total formula weight | 2578740.5 |
