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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8HL1

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A16S16s rRNA (1493-MER)polymer1494484680.21GenBank (68566501)Sulfolobus acidocaldarius DSM 639
2A23S23s rRNA (3000-MER)polymer3022980552.31GenBank (68566501)Sulfolobus acidocaldarius DSM 639
3AEFGElongation factor 2polymer72981106.51UniProt (P23112)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
In PDB		Sulfolobus acidocaldarius DSM 639EF-2
4A5S5s rRNA (122-MER)polymer12239440.51GenBank (68566501)Sulfolobus acidocaldarius DSM 639
5AL2P50S ribosomal protein L2polymer23424881.81UniProt (Q4JB43)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Sulfolobus acidocaldarius DSM 639
6AL3P50S ribosomal protein L3polymer33938186.31UniProt (Q4JB40)
Pfam (PF00297)
In PDB		Sulfolobus acidocaldarius DSM 639
7AL4P50S ribosomal protein L4polymer25127358.01UniProt (Q4JB41)
Pfam (PF00573)
In PDB		Sulfolobus acidocaldarius DSM 639
8AL5P50S ribosomal protein L5polymer16819095.41UniProt (P41202)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Sulfolobus acidocaldarius DSM 639
9AL6P50S ribosomal protein L6polymer18120305.71UniProt (O05637)
Pfam (PF00347)
In PDB		Sulfolobus acidocaldarius DSM 639
10ALX050S ribosomal protein L18Aepolymer768926.31UniProt (P38613)
Pfam (PF01775)
In PDB		Sulfolobus acidocaldarius DSM 63950S ribosomal protein L20e,50S ribosomal protein LX
11L10E50S ribosomal protein L10epolymer16418670.01UniProt (Q4JC84)
Pfam (PF00252)
In PDB		Sulfolobus acidocaldarius DSM 639
12L13P50S ribosomal protein L13polymer14015808.91UniProt (P39473)
Pfam (PF00572)
In PDB		Sulfolobus acidocaldarius DSM 639
13L141, L14250S ribosomal protein L14epolymer869559.12UniProt (Q4JAJ9)
Pfam (PF00467)
In PDB		Sulfolobus acidocaldarius DSM 639
14L14P50S ribosomal protein L14polymer13414707.11UniProt (Q4JB50)
Pfam (PF00238)
In PDB		Sulfolobus acidocaldarius DSM 639
15L15E50S ribosomal protein L15epolymer16920179.41UniProt (Q4JB20)
Pfam (PF00827)
In PDB		Sulfolobus acidocaldarius DSM 639
16L18E50S ribosomal protein L18epolymer11212747.31UniProt (P39474)
Pfam (PF17135)
In PDB		Sulfolobus acidocaldarius DSM 639HL29e
17L18P50S ribosomal protein L18polymer19321766.11UniProt (O05640)
Pfam (PF17144)
In PDB		Sulfolobus acidocaldarius DSM 639
18L19E50S ribosomal protein L19epolymer14417108.91UniProt (O05639)
Pfam (PF01280)
In PDB		Sulfolobus acidocaldarius DSM 639
19L22P50S ribosomal protein L22polymer15017360.31UniProt (Q4JB45)
Pfam (PF00237)
In PDB		Sulfolobus acidocaldarius DSM 639
20L23P50S ribosomal protein L23polymer819262.01UniProt (Q4JB42)
Pfam (PF00276)
In PDB		Sulfolobus acidocaldarius DSM 639
21L24E50S ribosomal protein L24epolymer546338.61UniProt (Q4JAV2)
Pfam (PF01246)
In PDB		Sulfolobus acidocaldarius DSM 639
22L24P50S ribosomal protein L24polymer12214130.71UniProt (O05633)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Sulfolobus acidocaldarius DSM 639
23L29P50S ribosomal protein L29polymer637378.81UniProt (Q4JB47)
Pfam (PF00831)
In PDB		Sulfolobus acidocaldarius DSM 639
24L30E50S ribosomal protein L30epolymer9410391.31UniProt (P11522)
Pfam (PF01248)
In PDB		Sulfolobus acidocaldarius DSM 639
25L30P50S ribosomal protein L30polymer15517819.71UniProt (O05642)
Pfam (PF00327)
In PDB		Sulfolobus acidocaldarius DSM 639
26L31E50S ribosomal protein L31epolymer758935.91UniProt (P38618)
Pfam (PF01198)
In PDB		Sulfolobus acidocaldarius DSM 639
27L32E50S ribosomal protein L32epolymer12314328.11UniProt (O05638)
Pfam (PF01655)
In PDB		Sulfolobus acidocaldarius DSM 639
28L34E50S ribosomal protein L34epolymer778993.51UniProt (O05981)
Pfam (PF01199)
In PDB		Sulfolobus acidocaldarius DSM 639
29L37A50S ribosomal protein L37Aepolymer657536.91UniProt (Q4JB29)
Pfam (PF01780)
In PDB		Sulfolobus acidocaldarius DSM 639Ribosomal protein L43e
30L37E50S ribosomal protein L37epolymer546274.41UniProt (Q4JAZ9)
Pfam (PF01907)
In PDB		Sulfolobus acidocaldarius DSM 639
31L39E50S ribosomal protein L39epolymer495861.11UniProt (P13005)
Pfam (PF00832)
In PDB		Sulfolobus acidocaldarius DSM 639L46e
32L40E50S ribosomal protein L40Epolymer556336.71UniProt (Q4JAP0)
Pfam (PF01020)
In PDB		Sulfolobus acidocaldarius DSM 639
33L44E50S ribosomal protein L44epolymer9210806.01UniProt (Q4J9B2)
Pfam (PF00935)
In PDB		Sulfolobus acidocaldarius DSM 639
34L7A1, L7A2, SL7A50S ribosomal protein L7Aepolymer12313351.53UniProt (Q4J8P1)
Pfam (PF01248)
In PDB		Sulfolobus acidocaldarius DSM 639Ribosomal protein L8e
35L15P50S ribosomal protein L15polymer14416476.11UniProt (O05643)
Pfam (PF00828)
In PDB		Sulfolobus acidocaldarius DSM 639
36L21E50S ribosomal protein L21epolymer9711155.31UniProt (Q4JB11)
Pfam (PF01157)
In PDB		Sulfolobus acidocaldarius DSM 639
37L45ADUF2280 domain-containing proteinpolymer10111662.51UniProt (Q4J9G6)
In PDB		Sulfolobus acidocaldarius DSM 639
38L46AConserved proteinpolymer708320.91UniProt (Q4J953)
Pfam (PF18533)
In PDB		Sulfolobus acidocaldarius DSM 639
39L47A50S ribosomal protein L47Apolymer809276.71UniProt (F2Z6C4)
In PDB		Sulfolobus acidocaldarius DSM 639
40AL1P50S ribosomal protein L1polymer21624416.61UniProt (P35024)
Pfam (PF00687)
In PDB		Sulfolobus acidocaldarius DSM 639
41AS3P30S ribosomal protein S3polymer20122396.51UniProt (Q4JB46)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Sulfolobus acidocaldarius DSM 639
42AS7P30S ribosomal protein S7polymer19321862.31UniProt (P17198)
Pfam (PF00177)
In PDB		Sulfolobus acidocaldarius DSM 639
43S10P30S ribosomal protein S10polymer10011775.91UniProt (P17199)
Pfam (PF00338)
In PDB		Sulfolobus acidocaldarius DSM 639
44S13P30S ribosomal protein S13polymer14717140.81UniProt (P39470)
Pfam (PF00416)
In PDB		Sulfolobus acidocaldarius DSM 639
45S14P30S ribosomal protein S14 type Zpolymer526190.41UniProt (O05635)
Pfam (PF00253)
In PDB		Sulfolobus acidocaldarius DSM 639
46S17E30S ribosomal protein S17epolymer627336.41UniProt (Q4JAX5)
Pfam (PF00833)
In PDB		Sulfolobus acidocaldarius DSM 639
47S19E30S ribosomal protein S19epolymer15017559.71UniProt (Q4J8U1)
Pfam (PF01090)
In PDB		Sulfolobus acidocaldarius DSM 639
48S19P30S ribosomal protein S19polymer11513800.41UniProt (Q4JB44)
Pfam (PF00203)
In PDB		Sulfolobus acidocaldarius DSM 639
49AS9P30S ribosomal protein S9polymer13615638.11UniProt (P39468)
Pfam (PF00380)
In PDB		Sulfolobus acidocaldarius DSM 639
50S28E30S ribosomal protein S28epolymer637094.31UniProt (Q4JAV1)
Pfam (PF01200)
In PDB		Sulfolobus acidocaldarius DSM 639
51S27A30S ribosomal protein S27aepolymer546261.41UniProt (Q4JAG0)
Pfam (PF01599)
In PDB		Sulfolobus acidocaldarius DSM 639
52AS2P30S ribosomal protein S2polymer19622474.01UniProt (P39478)
Pfam (PF00318)
In PDB		Sulfolobus acidocaldarius DSM 639
53AS4E30S ribosomal protein S4epolymer24027340.01UniProt (O05634)
Pfam (PF01479)
Pfam (PF00900)
In PDB		Sulfolobus acidocaldarius DSM 639
54AS4P30S ribosomal protein S4polymer16619440.61UniProt (P39467)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Sulfolobus acidocaldarius DSM 639
55AS5P30S ribosomal protein S5polymer20422782.71UniProt (O05641)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Sulfolobus acidocaldarius DSM 639
56AS6E30S ribosomal protein S6epolymer10511479.41UniProt (Q4JAI1)
Pfam (PF01092)
In PDB		Sulfolobus acidocaldarius DSM 639
57AS8E30S ribosomal protein S8epolymer12614113.21UniProt (Q4JAP5)
Pfam (PF01201)
In PDB		Sulfolobus acidocaldarius DSM 639
58AS8PSmall ribosomal subunit protein uS8polymer13014624.21UniProt (O05636)
Pfam (PF00410)
In PDB		Sulfolobus acidocaldarius DSM 63930S ribosomal protein S8
59S11P30S ribosomal protein S11polymer12813652.61UniProt (P39469)
Pfam (PF00411)
In PDB		Sulfolobus acidocaldarius DSM 639
60S12P30S ribosomal protein S12polymer14315703.61UniProt (P11524)
Pfam (PF00164)
In PDB		Sulfolobus acidocaldarius DSM 639
61S15P30S ribosomal protein S15polymer14917438.41UniProt (Q4JAI3)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Sulfolobus acidocaldarius DSM 639
62S17P30S ribosomal protein S17polymer11112602.61UniProt (Q4JB49)
Pfam (PF00366)
In PDB		Sulfolobus acidocaldarius DSM 639
63S24E30S ribosomal protein S24epolymer9610765.21UniProt (Q4JAF9)
Pfam (PF01282)
In PDB		Sulfolobus acidocaldarius DSM 639
64S27E30S ribosomal protein S27epolymer596577.01UniProt (Q4J9B1)
Pfam (PF01667)
In PDB		Sulfolobus acidocaldarius DSM 639
65S3AE30S ribosomal protein S3Aepolymer18921876.61UniProt (Q4JB17)
Pfam (PF01015)
In PDB		Sulfolobus acidocaldarius DSM 639Ribosomal protein S1e
66APTN, AETNtRNA (76-MER)polymer7624485.52Sulfolobus acidocaldarius DSM 639
67AMRNmRNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')polymer133935.21Sulfolobus acidocaldarius DSM 639
68APTPPHE-PHE-PHE-PHE-PHE-PHEpolymer6901.11Sulfolobus acidocaldarius DSM 639
69AEFGPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERnon-polymer522.21Chemie (GNP)
70AS2P, AS5P, AS8PUNKNOWNnon-polymer103.157Chemie (UNK)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains72
Total formula weight2569488.8
Non-Polymers*Number of molecules58
Total formula weight6400.0
All*Total formula weight2575888.8
*Water molecules are not included.

220113

PDB entries from 2024-05-22

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