8HHZ
SARS-CoV-2 Omicron BA.1 Spike in complex with IY-2A
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1261 | 140204.9 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
2 | E, G, I | IY-2A Fab heavy chain | polymer | 224 | 23576.6 | 3 | Homo sapiens | ||
3 | F, H, J | IY-2A Fab light chain | polymer | 216 | 23078.3 | 3 | Homo sapiens |
Sequence modifications
A, B, C: 14 - 1210 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met -5 | - | initiating methionine |
Lys -4 | - | expression tag |
Val -3 | - | expression tag |
Lys -2 | - | expression tag |
Leu -1 | - | expression tag |
Leu 0 | - | expression tag |
Val 1 | - | expression tag |
Leu 2 | - | expression tag |
Leu 3 | - | expression tag |
Cys 4 | - | expression tag |
Thr 5 | - | expression tag |
Phe 6 | - | expression tag |
Thr 7 | - | expression tag |
Ala 8 | - | expression tag |
Thr 9 | - | expression tag |
Tyr 10 | - | expression tag |
Ala 11 | - | expression tag |
Gly 12 | - | expression tag |
Thr 13 | - | expression tag |
Val 67 | Ala 67 | variant |
- | His 69 | deletion |
- | Val 70 | deletion |
Ile 95 | Thr 95 | variant |
Asp 142 | Gly 142 | variant |
- | Val 143 | deletion |
- | Tyr 144 | deletion |
- | Tyr 145 | deletion |
Ile 210 | Leu 212 | variant |
Glu 210 | - | insertion |
Pro 210 | - | insertion |
Glu 210 | - | insertion |
Asp 339 | Gly 339 | variant |
Leu 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Ser 446 | Gly 446 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Arg 493 | Gln 493 | variant |
Ser 496 | Gly 496 | variant |
Arg 498 | Gln 498 | variant |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Lys 547 | Thr 547 | variant |
Gly 614 | Asp 614 | variant |
Tyr 655 | His 655 | variant |
Lys 679 | Asn 679 | variant |
His 681 | Pro 681 | variant |
Gly 682 | Arg 682 | variant |
Ser 683 | Arg 683 | variant |
Ser 685 | Arg 685 | variant |
Lys 764 | Asn 764 | variant |
Tyr 796 | Asp 796 | variant |
Lys 856 | Asn 856 | variant |
His 954 | Gln 954 | variant |
Lys 969 | Asn 969 | variant |
Phe 981 | Leu 981 | variant |
Pro 986 | Lys 986 | variant |
Pro 987 | Val 987 | variant |
Lys 1211 | - | expression tag |
Asp 1212 | - | expression tag |
Ile 1213 | - | expression tag |
Arg 1214 | - | expression tag |
Ser 1215 | - | expression tag |
Leu 1216 | - | expression tag |
Val 1217 | - | expression tag |
Pro 1218 | - | expression tag |
Arg 1219 | - | expression tag |
Gly 1220 | - | expression tag |
Ser 1221 | - | expression tag |
Pro 1222 | - | expression tag |
Gly 1223 | - | expression tag |
Ser 1224 | - | expression tag |
Gly 1225 | - | expression tag |
Tyr 1226 | - | expression tag |
Ile 1227 | - | expression tag |
Pro 1228 | - | expression tag |
Glu 1229 | - | expression tag |
Ala 1230 | - | expression tag |
Pro 1231 | - | expression tag |
Arg 1232 | - | expression tag |
Asp 1233 | - | expression tag |
Gly 1234 | - | expression tag |
Gln 1235 | - | expression tag |
Ala 1236 | - | expression tag |
Tyr 1237 | - | expression tag |
Val 1238 | - | expression tag |
Arg 1239 | - | expression tag |
Lys 1240 | - | expression tag |
Asp 1241 | - | expression tag |
Gly 1242 | - | expression tag |
Glu 1243 | - | expression tag |
Trp 1244 | - | expression tag |
Val 1245 | - | expression tag |
Leu 1246 | - | expression tag |
Leu 1247 | - | expression tag |
Ser 1248 | - | expression tag |
Thr 1249 | - | expression tag |
Phe 1250 | - | expression tag |
Leu 1251 | - | expression tag |
Gly 1252 | - | expression tag |
His 1253 | - | expression tag |
His 1254 | - | expression tag |
His 1255 | - | expression tag |
His 1256 | - | expression tag |
His 1257 | - | expression tag |
His 1258 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 560579.3 | |
All* | Total formula weight | 560579.3 |