8HHX
SARS-CoV-2 Delta Spike in complex with FP-12A
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1259 | 139421.5 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | F, H | FP-12A Fab heavy chain | polymer | 224 | 23925.7 | 2 | Homo sapiens | ||
3 | G, I | FP-12A Fab light chain | polymer | 216 | 23124.3 | 2 | Homo sapiens | ||
4 | K, L, P, U, V... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 7 | In PDB GlyTouCan (G42666HT) | |||
5 | B, C, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 21 | Chemie (NAG) |
Sequence modifications
A, B, C: 14 - 1208 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met -5 | - | expression tag |
Lys -4 | - | expression tag |
Val -3 | - | expression tag |
Lys -2 | - | expression tag |
Leu -1 | - | expression tag |
Leu 0 | - | expression tag |
Val 1 | - | expression tag |
Leu 2 | - | expression tag |
Leu 3 | - | expression tag |
Cys 4 | - | expression tag |
Thr 5 | - | expression tag |
Phe 6 | - | expression tag |
Thr 7 | - | expression tag |
Ala 8 | - | expression tag |
Thr 9 | - | expression tag |
Tyr 10 | - | expression tag |
Ala 11 | - | expression tag |
Gly 12 | - | expression tag |
Thr 13 | - | expression tag |
Arg 19 | Thr 19 | variant |
Asp 142 | Gly 142 | variant |
- | Glu 156 | deletion |
- | Phe 157 | deletion |
Gly 158 | Arg 158 | variant |
Arg 452 | Leu 452 | variant |
Lys 478 | Thr 478 | variant |
Gly 614 | Asp 614 | variant |
Arg 681 | Pro 681 | variant |
Gly 682 | Arg 682 | variant |
Ser 683 | Arg 683 | variant |
Gly 685 | Arg 685 | variant |
Asn 950 | Asp 950 | variant |
Pro 986 | Lys 986 | variant |
Pro 987 | Val 987 | variant |
Asp 1209 | - | expression tag |
Ile 1210 | - | expression tag |
Arg 1211 | - | expression tag |
Ser 1212 | - | expression tag |
Leu 1213 | - | expression tag |
Val 1214 | - | expression tag |
Pro 1215 | - | expression tag |
Arg 1216 | - | expression tag |
Gly 1217 | - | expression tag |
Ser 1218 | - | expression tag |
Pro 1219 | - | expression tag |
Gly 1220 | - | expression tag |
Ser 1221 | - | expression tag |
Gly 1222 | - | expression tag |
Tyr 1223 | - | expression tag |
Ile 1224 | - | expression tag |
Pro 1225 | - | expression tag |
Glu 1226 | - | expression tag |
Ala 1227 | - | expression tag |
Pro 1228 | - | expression tag |
Arg 1229 | - | expression tag |
Asp 1230 | - | expression tag |
Gly 1231 | - | expression tag |
Gln 1232 | - | expression tag |
Ala 1233 | - | expression tag |
Tyr 1234 | - | expression tag |
Val 1235 | - | expression tag |
Arg 1236 | - | expression tag |
Lys 1237 | - | expression tag |
Asp 1238 | - | expression tag |
Gly 1239 | - | expression tag |
Glu 1240 | - | expression tag |
Trp 1241 | - | expression tag |
Val 1242 | - | expression tag |
Leu 1243 | - | expression tag |
Leu 1244 | - | expression tag |
Ser 1245 | - | expression tag |
Thr 1246 | - | expression tag |
Phe 1247 | - | expression tag |
Leu 1248 | - | expression tag |
Gly 1249 | - | expression tag |
His 1250 | - | expression tag |
His 1251 | - | expression tag |
His 1252 | - | expression tag |
His 1253 | - | expression tag |
His 1254 | - | expression tag |
His 1255 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 7 |
Total formula weight | 512364.7 | |
Branched | Number of molecules | 7 |
Total formula weight | 2970.8 | |
Non-Polymers* | Number of molecules | 21 |
Total formula weight | 4645.4 | |
All* | Total formula weight | 519980.9 |