8H2I
Near-atomic structure of five-fold averaged PBCV-1 capsid
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | aa, ab, ac, ad, ae... | Major capsid protein (MCP) | polymer | 437 | 48199.6 | 72 | UniProt (P30328) Pfam (PF16903) Pfam (PF04451) In PDB | Paramecium bursaria Chlorella virus 1 | Major capsid protein |
2 | bu, bv, bw, bx, by... | MCPv1 | polymer | 520 | 58136.6 | 8 | UniProt (O41104) Pfam (PF16903) Pfam (PF04451) In PDB | Paramecium bursaria Chlorella virus 1 | Major capsid protein variant 1 (MCPv1) |
3 | bC | MCPv2 | polymer | 486 | 55733.9 | 1 | UniProt (M1I493) Pfam (PF16903) Pfam (PF04451) In PDB | Paramecium bursaria Chlorella virus 1 | Major capsid protein variant 2 (MCPv2) |
4 | bD, bF, cX, cZ, dd... | MCPv3 | polymer | 403 | 45115.6 | 11 | UniProt (Q89346) Pfam (PF16903) Pfam (PF04451) In PDB | Paramecium bursaria Chlorella virus 1 | Major capsid protein variant 3 (MCPv3) |
5 | bE, cY, de, dq | MCPv4 | polymer | 401 | 45034.8 | 4 | UniProt (Q89345) Pfam (PF16903) Pfam (PF04451) In PDB | Paramecium bursaria Chlorella virus 1 | Major capsid protein variant 4 (MCPv4) |
6 | bG | P1v1 | polymer | 530 | 57555.6 | 1 | UniProt (M1I677) Pfam (PF19254) In PDB | Paramecium bursaria Chlorella virus 1 | DUF5901 domain-containing protein, Penton protein variant 1 (P1v1) |
7 | bH | P2 | polymer | 576 | 63888.1 | 1 | UniProt (Q84656) Pfam (PF19251) In PDB | Paramecium bursaria Chlorella virus 1 | DUF5899 domain-containing protein |
8 | bI, bJ, bK | P3 | polymer | 171 | 19116.7 | 3 | UniProt (Q98573) In PDB | Paramecium bursaria Chlorella virus 1 | Reductive dehalogenase subunit A |
9 | bL, bM, bN, bO | P4 | polymer | 181 | 20637.3 | 4 | UniProt (O41054) In PDB | Paramecium bursaria Chlorella virus 1 | DUF2268 domain-containing protein |
10 | bP | P5 | polymer | 146 | 16455.8 | 1 | UniProt (Q98576) In PDB | Paramecium bursaria Chlorella virus 1 | NADH-ubiquinone oxidoreductase subunit |
11 | bQ | P6 | polymer | 216 | 24036.7 | 1 | UniProt (Q84523) In PDB | Paramecium bursaria Chlorella virus 1 | PsbP domain-containing protein |
12 | bR | P8 | polymer | 173 | 19226.9 | 1 | UniProt (O41126) Pfam (PF19065) In PDB | Paramecium bursaria Chlorella virus 1 | Copine domain-containing protein |
13 | bS | P9 | polymer | 210 | 23407.6 | 1 | UniProt (Q98459) Pfam (PF19066) In PDB | Paramecium bursaria Chlorella virus 1 | Transmembrane protein |
14 | bT, bU, bV, bW, bX... | P11 | polymer | 207 | 23322.7 | 12 | UniProt (Q84666) In PDB | Paramecium bursaria Chlorella virus 1 | Secreted protein |
15 | cf | P12 | polymer | 151 | 17715.5 | 1 | UniProt (Q84459) In PDB | Paramecium bursaria Chlorella virus 1 | |
16 | cg | P13 | polymer | 98 | 11070.8 | 1 | UniProt (Q98473) In PDB | Paramecium bursaria Chlorella virus 1 | NVEALA family protein |
17 | ch | P15 | polymer | 155 | 18627.4 | 1 | UniProt (Q98534) In PDB | Paramecium bursaria Chlorella virus 1 | Entry/fusion complex component |
18 | ci | P16 | polymer | 93 | 9844.6 | 1 | UniProt (Q98530) In PDB | Paramecium bursaria Chlorella virus 1 | Glycine-rich protein |
19 | cj, ck, cl, cm | P17 | polymer | 80 | 9122.4 | 4 | UniProt (Q84629) In PDB | Paramecium bursaria Chlorella virus 1 | |
20 | cn, co | P18 | polymer | 148 | 16497.8 | 2 | UniProt (Q84533) In PDB | Paramecium bursaria Chlorella virus 1 | Transmembrane protein |
21 | cp, cq, cr, cs, ct... | P19 | polymer | 378 | 43094.4 | 25 | UniProt (Q84602) In PDB | Paramecium bursaria Chlorella virus 1 | A2M domain-containing protein |
22 | cO, cQ, da, dc, dg... | P20 | polymer | 1335 | 137671.3 | 8 | UniProt (Q89353) Pfam (PF06598) In PDB | Paramecium bursaria Chlorella virus 1 | Peptidase S74 domain-containing protein |
23 | cP, db, dh, dt | P21 | polymer | 1369 | 141414.2 | 4 | UniProt (Q89349) In PDB | Paramecium bursaria Chlorella virus 1 | |
24 | cR, cS, cT | MCPv5 | polymer | 400 | 45585.5 | 3 | UniProt (O41040) Pfam (PF16903) Pfam (PF04451) In PDB | Paramecium bursaria Chlorella virus 1 | Capsid protein |
25 | cU, cV, cW | P22 | polymer | 1343 | 137927.8 | 3 | UniProt (Q84443) Pfam (PF06598) Pfam (PF11962) In PDB | Paramecium bursaria Chlorella virus 1 | Peptidase_G2 domain-containing protein |
26 | dm, dn, do | P23 | polymer | 1359 | 140121.7 | 3 | UniProt (Q89360) In PDB | Paramecium bursaria Chlorella virus 1 | Chlorovirus glycoprotein repeat domain-containing protein |
Sequence modifications
bC: 1 - 486 (UniProt: M1I493)
bG: 1 - 530 (UniProt: M1I677)
PDB | External Database | Details |
---|---|---|
Ser 343 | Gly 343 | variant |
PDB | External Database | Details |
---|---|---|
Asn 113 | Ser 113 | variant |
Ile 348 | Val 348 | variant |
Ser 364 | Thr 364 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 177 |
Total formula weight | 9133988.6 | |
All* | Total formula weight | 9133988.6 |