8H2I
Near-atomic structure of five-fold averaged PBCV-1 capsid
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, AA, AB, B, BA... (aa, ab, ac, ad, ae...) | Major capsid protein (MCP) | polymer | 437 | 48199.6 | 72 | UniProt (P30328) Pfam (PF16903) Pfam (PF04451) | Paramecium bursaria Chlorella virus 1 | Major capsid protein |
| 2 | AC, BC, UB, VB, WB... (bu, bv, bw, bx, by...) | MCPv1 | polymer | 520 | 58136.6 | 8 | UniProt (O41104) Pfam (PF16903) Pfam (PF04451) | Paramecium bursaria Chlorella virus 1 | Major capsid protein variant 1 (MCPv1) |
| 3 | CC (bC) | MCPv2 | polymer | 486 | 55733.9 | 1 | UniProt (M1I493) Pfam (PF16903) Pfam (PF04451) | Paramecium bursaria Chlorella virus 1 | Major capsid protein variant 2 (MCPv2) |
| 4 | DC, DF, FC, FF, JF... (bD, bF, cX, cZ, dd...) | MCPv3 | polymer | 403 | 45115.6 | 11 | UniProt (Q89346) Pfam (PF16903) Pfam (PF04451) | Paramecium bursaria Chlorella virus 1 | Major capsid protein variant 3 (MCPv3) |
| 5 | EC, EF, QF, YE (bE, cY, de, dq) | MCPv4 | polymer | 401 | 45034.8 | 4 | UniProt (Q89345) Pfam (PF16903) Pfam (PF04451) | Paramecium bursaria Chlorella virus 1 | Major capsid protein variant 4 (MCPv4) |
| 6 | GC (bG) | P1v1 | polymer | 530 | 57555.6 | 1 | UniProt (M1I677) Pfam (PF19254) | Paramecium bursaria Chlorella virus 1 | DUF5901 domain-containing protein, Penton protein variant 1 (P1v1) |
| 7 | HC (bH) | P2 | polymer | 576 | 63888.1 | 1 | UniProt (Q84656) Pfam (PF19251) | Paramecium bursaria Chlorella virus 1 | DUF5899 domain-containing protein |
| 8 | IC, JC, KC (bI, bJ, bK) | P3 | polymer | 171 | 19116.7 | 3 | UniProt (Q98573) | Paramecium bursaria Chlorella virus 1 | Reductive dehalogenase subunit A |
| 9 | LC, MC, NC, OC (bL, bM, bN, bO) | P4 | polymer | 181 | 20637.3 | 4 | UniProt (O41054) | Paramecium bursaria Chlorella virus 1 | DUF2268 domain-containing protein |
| 10 | PC (bP) | P5 | polymer | 146 | 16455.8 | 1 | UniProt (Q98576) | Paramecium bursaria Chlorella virus 1 | NADH-ubiquinone oxidoreductase subunit |
| 11 | QC (bQ) | P6 | polymer | 216 | 24036.7 | 1 | UniProt (Q84523) | Paramecium bursaria Chlorella virus 1 | PsbP domain-containing protein |
| 12 | RC (bR) | P8 | polymer | 173 | 19226.9 | 1 | UniProt (O41126) Pfam (PF19065) | Paramecium bursaria Chlorella virus 1 | Copine domain-containing protein |
| 13 | SC (bS) | P9 | polymer | 210 | 23407.6 | 1 | UniProt (Q98459) Pfam (PF19066) | Paramecium bursaria Chlorella virus 1 | Transmembrane protein |
| 14 | AD, BD, CD, DD, ED... (bT, bU, bV, bW, bX...) | P11 | polymer | 207 | 23322.7 | 12 | UniProt (Q84666) | Paramecium bursaria Chlorella virus 1 | Secreted protein |
| 15 | FD (cf) | P12 | polymer | 151 | 17715.5 | 1 | UniProt (Q84459) | Paramecium bursaria Chlorella virus 1 | |
| 16 | GD (cg) | P13 | polymer | 98 | 11070.8 | 1 | UniProt (Q98473) | Paramecium bursaria Chlorella virus 1 | NVEALA family protein |
| 17 | HD (ch) | P15 | polymer | 155 | 18627.4 | 1 | UniProt (Q98534) | Paramecium bursaria Chlorella virus 1 | Entry/fusion complex component |
| 18 | ID (ci) | P16 | polymer | 93 | 9844.6 | 1 | UniProt (Q98530) | Paramecium bursaria Chlorella virus 1 | Glycine-rich protein |
| 19 | JD, KD, LD, MD (cj, ck, cl, cm) | P17 | polymer | 80 | 9122.4 | 4 | UniProt (Q84629) | Paramecium bursaria Chlorella virus 1 | |
| 20 | ND, OD (cn, co) | P18 | polymer | 148 | 16497.8 | 2 | UniProt (Q84533) | Paramecium bursaria Chlorella virus 1 | Transmembrane protein |
| 21 | AE, BE, CE, DE, EE... (cp, cq, cr, cs, ct...) | P19 | polymer | 378 | 43094.4 | 25 | UniProt (Q84602) | Paramecium bursaria Chlorella virus 1 | A2M domain-containing protein |
| 22 | AF, CF, GF, IF, OE... (cO, cQ, da, dc, dg...) | P20 | polymer | 1335 | 137671.3 | 8 | UniProt (Q89353) Pfam (PF06598) | Paramecium bursaria Chlorella virus 1 | Peptidase S74 domain-containing protein |
| 23 | BF, HF, PE, TF (cP, db, dh, dt) | P21 | polymer | 1369 | 141414.2 | 4 | UniProt (Q89349) | Paramecium bursaria Chlorella virus 1 | |
| 24 | RE, SE, TE (cR, cS, cT) | MCPv5 | polymer | 400 | 45585.5 | 3 | UniProt (O41040) Pfam (PF16903) Pfam (PF04451) | Paramecium bursaria Chlorella virus 1 | Capsid protein |
| 25 | UE, VE, WE (cU, cV, cW) | P22 | polymer | 1343 | 137927.8 | 3 | UniProt (Q84443) Pfam (PF06598) Pfam (PF11962) | Paramecium bursaria Chlorella virus 1 | Peptidase_G2 domain-containing protein |
| 26 | MF, NF, OF (dm, dn, do) | P23 | polymer | 1359 | 140121.7 | 3 | UniProt (Q89360) | Paramecium bursaria Chlorella virus 1 | Chlorovirus glycoprotein repeat domain-containing protein |
Sequence modifications
bC: 1 - 486 (UniProt: M1I493)
bG: 1 - 530 (UniProt: M1I677)
| PDB | External Database | Details |
|---|---|---|
| Ser 343 | Gly 343 | variant |
| PDB | External Database | Details |
|---|---|---|
| Asn 113 | Ser 113 | variant |
| Ile 348 | Val 348 | variant |
| Ser 364 | Thr 364 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 177 |
| Total formula weight | 9133988.6 | |
| All* | Total formula weight | 9133988.6 |
