8H2I

Near-atomic structure of five-fold averaged PBCV-1 capsid

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	aa, ab, ac, ad, ae...	Major capsid protein (MCP)	polymer	437	48199.6	72	UniProt (P30328) Pfam (PF16903) Pfam (PF04451) In PDB	Paramecium bursaria Chlorella virus 1	Major capsid protein
2	bu, bv, bw, bx, by...	MCPv1	polymer	520	58136.6	8	UniProt (O41104) Pfam (PF16903) Pfam (PF04451) In PDB	Paramecium bursaria Chlorella virus 1	Major capsid protein variant 1 (MCPv1)
3	bC	MCPv2	polymer	486	55733.9	1	UniProt (M1I493) Pfam (PF16903) Pfam (PF04451) In PDB	Paramecium bursaria Chlorella virus 1	Major capsid protein variant 2 (MCPv2)
4	bD, bF, cX, cZ, dd...	MCPv3	polymer	403	45115.6	11	UniProt (Q89346) Pfam (PF16903) Pfam (PF04451) In PDB	Paramecium bursaria Chlorella virus 1	Major capsid protein variant 3 (MCPv3)
5	bE, cY, de, dq	MCPv4	polymer	401	45034.8	4	UniProt (Q89345) Pfam (PF16903) Pfam (PF04451) In PDB	Paramecium bursaria Chlorella virus 1	Major capsid protein variant 4 (MCPv4)
6	bG	P1v1	polymer	530	57555.6	1	UniProt (M1I677) Pfam (PF19254) In PDB	Paramecium bursaria Chlorella virus 1	DUF5901 domain-containing protein, Penton protein variant 1 (P1v1)
7	bH	P2	polymer	576	63888.1	1	UniProt (Q84656) Pfam (PF19251) In PDB	Paramecium bursaria Chlorella virus 1	DUF5899 domain-containing protein
8	bI, bJ, bK	P3	polymer	171	19116.7	3	UniProt (Q98573) In PDB	Paramecium bursaria Chlorella virus 1	Reductive dehalogenase subunit A
9	bL, bM, bN, bO	P4	polymer	181	20637.3	4	UniProt (O41054) In PDB	Paramecium bursaria Chlorella virus 1	DUF2268 domain-containing protein
10	bP	P5	polymer	146	16455.8	1	UniProt (Q98576) In PDB	Paramecium bursaria Chlorella virus 1	NADH-ubiquinone oxidoreductase subunit
11	bQ	P6	polymer	216	24036.7	1	UniProt (Q84523) In PDB	Paramecium bursaria Chlorella virus 1	PsbP domain-containing protein
12	bR	P8	polymer	173	19226.9	1	UniProt (O41126) Pfam (PF19065) In PDB	Paramecium bursaria Chlorella virus 1	Copine domain-containing protein
13	bS	P9	polymer	210	23407.6	1	UniProt (Q98459) Pfam (PF19066) In PDB	Paramecium bursaria Chlorella virus 1	Transmembrane protein
14	bT, bU, bV, bW, bX...	P11	polymer	207	23322.7	12	UniProt (Q84666) In PDB	Paramecium bursaria Chlorella virus 1	Secreted protein
15	cf	P12	polymer	151	17715.5	1	UniProt (Q84459) In PDB	Paramecium bursaria Chlorella virus 1
16	cg	P13	polymer	98	11070.8	1	UniProt (Q98473) In PDB	Paramecium bursaria Chlorella virus 1	NVEALA family protein
17	ch	P15	polymer	155	18627.4	1	UniProt (Q98534) In PDB	Paramecium bursaria Chlorella virus 1	Entry/fusion complex component
18	ci	P16	polymer	93	9844.6	1	UniProt (Q98530) In PDB	Paramecium bursaria Chlorella virus 1	Glycine-rich protein
19	cj, ck, cl, cm	P17	polymer	80	9122.4	4	UniProt (Q84629) In PDB	Paramecium bursaria Chlorella virus 1
20	cn, co	P18	polymer	148	16497.8	2	UniProt (Q84533) In PDB	Paramecium bursaria Chlorella virus 1	Transmembrane protein
21	cp, cq, cr, cs, ct...	P19	polymer	378	43094.4	25	UniProt (Q84602) In PDB	Paramecium bursaria Chlorella virus 1	A2M domain-containing protein
22	cO, cQ, da, dc, dg...	P20	polymer	1335	137671.3	8	UniProt (Q89353) Pfam (PF06598) In PDB	Paramecium bursaria Chlorella virus 1	Peptidase S74 domain-containing protein
23	cP, db, dh, dt	P21	polymer	1369	141414.2	4	UniProt (Q89349) In PDB	Paramecium bursaria Chlorella virus 1
24	cR, cS, cT	MCPv5	polymer	400	45585.5	3	UniProt (O41040) Pfam (PF16903) Pfam (PF04451) In PDB	Paramecium bursaria Chlorella virus 1	Capsid protein
25	cU, cV, cW	P22	polymer	1343	137927.8	3	UniProt (Q84443) Pfam (PF06598) Pfam (PF11962) In PDB	Paramecium bursaria Chlorella virus 1	Peptidase_G2 domain-containing protein
26	dm, dn, do	P23	polymer	1359	140121.7	3	UniProt (Q89360) In PDB	Paramecium bursaria Chlorella virus 1	Chlorovirus glycoprotein repeat domain-containing protein

Sequence modifications

bC: 1 - 486 (UniProt: M1I493)

PDB	External Database	Details
Ser 343	Gly 343	variant

bG: 1 - 530 (UniProt: M1I677)

PDB	External Database	Details
Asn 113	Ser 113	variant
Ile 348	Val 348	variant
Ser 364	Thr 364	variant

Contents of the asymmetric unit

Polymers	Number of chains	177
	Total formula weight	9133988.6
All*	Total formula weight	9133988.6

*Water molecules are not included.