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8GPC

Crystal structure of NDM-1 at pH5.5 (Succinate) in complex with hydrolyzed ampicillin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Metallo beta lactamase NDM-1polymer27028527.42UniProt (E9NWK5)Klebsiella pneumoniaeNew Delhi Metallo carbapenemase-1,New Delhi metallo-beta-lactamase NDM-1,New Delhi metallo-beta-lactamse 1
2C, D, G, H
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
3E, I
(A, B)
(2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acidnon-polymer367.42Chemie (ZZ7)
PubChem (53364402)
PubChem (76967799)
PubChem (76967800)
PubChem (100971666)
PubChem (101043514)
PubChem (6453491)
PubChem (6914605)
PubChem (100971667)
PubChem (101505298)
PubChem (101543018)
PubChem (11726464)
PubChem (131698399)
PubChem (145865052)
PubChem (163410307)
4F
(A)
SODIUM IONnon-polymer23.01Chemie (NA)
PubChem (923)
5J, K
(A, B)
waterwater18.0599Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight57054.9
Non-Polymers*Number of molecules7
Total formula weight1019.5
All*Total formula weight58074.3
*Water molecules are not included.

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PDB entries from 2026-05-13

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