8GLW
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, E, F... (A, B, C, D, E...) | Transposon Tn7 transposition protein TnsC | polymer | 523 | 59318.9 | 7 | UniProt (P05846) Pfam (PF13401) | Escherichia coli | Protein E |
2 | D, I (Y, X) | Transposon Tn7 transposition protein TnsD | polymer | 318 | 36636.0 | 2 | UniProt (P13991) Pfam (PF06527) Pfam (PF15978) | Escherichia coli | |
3 | J (H) | DNA (50-MER) | polymer | 50 | 15438.9 | 1 | Escherichia coli | ||
4 | K (I) | DNA (50-MER) | polymer | 50 | 15366.8 | 1 | Escherichia coli | ||
5 | L, N, S, U, X (A, B, D, E, F) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 5 | Chemie (ADP) | |||
6 | M, O, Q, T, V... (A, B, C, D, E...) | MAGNESIUM ION | non-polymer | 24.3 | 7 | Chemie (MG) | |||
7 | P, Y (C, G) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 2 | Chemie (ATP) | |||
8 | AA, R (X, Y) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
A, B, C, D, E, F, G: 1 - 503 (UniProt: P05846)
PDB | External Database | Details |
---|---|---|
Gly 2 | Ser 2 | engineered mutation |
Pro 504 | - | expression tag |
Asn 505 | - | expression tag |
Ser 506 | - | expression tag |
Ser 507 | - | expression tag |
Ser 508 | - | expression tag |
Val 509 | - | expression tag |
Asp 510 | - | expression tag |
Lys 511 | - | expression tag |
Leu 512 | - | expression tag |
Ala 513 | - | expression tag |
Ala 514 | - | expression tag |
Ala 515 | - | expression tag |
Leu 516 | - | expression tag |
Glu 517 | - | expression tag |
His 518 | - | expression tag |
His 519 | - | expression tag |
His 520 | - | expression tag |
His 521 | - | expression tag |
His 522 | - | expression tag |
His 523 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 11 |
Total formula weight | 519310.3 | |
Non-Polymers* | Number of molecules | 16 |
Total formula weight | 3451.3 | |
All* | Total formula weight | 522761.6 |