8GLH
Crystal Structure of Human CD1b in Complex with Endogenous PC C40:5
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | T-cell surface glycoprotein CD1b | polymer | 300 | 33530.7 | 1 | UniProt (P29016) Pfam (PF16497) Pfam (PF07654) In PDB | Homo sapiens (human) | |
2 | B | Beta-2-microglobulin | polymer | 101 | 11974.5 | 1 | UniProt (P61769) Pfam (PF07654) In PDB | Homo sapiens (human) | |
3 | C | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1203.1 | 1 | In PDB GlyTouCan (G11460AB) | |||
4 | D | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 878.8 | 1 | In PDB GlyTouCan (G92953ND) | |||
5 | A, B | IODIDE ION | non-polymer | 126.9 | 3 | Chemie (IOD) | |||
6 | A | (11E)-hexadec-11-enoic acid | non-polymer | 254.4 | 1 | Chemie (3IV) | |||
7 | A | [(2~{R})-1-dodecanoyloxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propan-2-yl] (8~{Z},11~{Z},14~{Z},24~{Z},27~{Z})-triaconta-8,11,14,24,27-pentaenoate | non-polymer | 865.2 | 1 | Chemie (3IY) | |||
8 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
9 | B | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
10 | water | water | 18.0 | 402 | Chemie (HOH) |
Sequence modifications
A: 2 - 278 (UniProt: P29016)
B: 3 - 101 (UniProt: P61769)
PDB | External Database | Details |
---|---|---|
Gly 279 | - | expression tag |
Ser 280 | - | expression tag |
Gly 281 | - | expression tag |
Leu 282 | - | expression tag |
Asn 283 | - | expression tag |
Asp 284 | - | expression tag |
Ile 285 | - | expression tag |
Phe 286 | - | expression tag |
Glu 287 | - | expression tag |
Ala 288 | - | expression tag |
Gln 289 | - | expression tag |
Lys 290 | - | expression tag |
Ile 291 | - | expression tag |
Glu 292 | - | expression tag |
Trp 293 | - | expression tag |
His 294 | - | expression tag |
Glu 295 | - | expression tag |
His 296 | - | expression tag |
His 297 | - | expression tag |
His 298 | - | expression tag |
His 299 | - | expression tag |
His 300 | - | expression tag |
His 301 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Pro 1 | - | expression tag |
Lys 2 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 45505.1 | |
Branched | Number of molecules | 2 |
Total formula weight | 2081.9 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 1771.6 | |
All* | Total formula weight | 49358.7 |