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8GLH

Crystal Structure of Human CD1b in Complex with Endogenous PC C40:5

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AT-cell surface glycoprotein CD1bpolymer30033530.71UniProt (P29016)
Pfam (PF16497)
Pfam (PF07654)
In PDB
Homo sapiens (human)
2BBeta-2-microglobulinpolymer10111974.51UniProt (P61769)
Pfam (PF07654)
In PDB
Homo sapiens (human)
3Calpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched1203.11In PDB
GlyTouCan (G11460AB)
4Dbeta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched878.81In PDB
GlyTouCan (G92953ND)
5A, BIODIDE IONnon-polymer126.93Chemie (IOD)
6A(11E)-hexadec-11-enoic acidnon-polymer254.41Chemie (3IV)
7A[(2~{R})-1-dodecanoyloxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propan-2-yl] (8~{Z},11~{Z},14~{Z},24~{Z},27~{Z})-triaconta-8,11,14,24,27-pentaenoatenon-polymer865.21Chemie (3IY)
8A1,2-ETHANEDIOLnon-polymer62.14Chemie (EDO)
9BSODIUM IONnon-polymer23.01Chemie (NA)
10waterwater18.0402Chemie (HOH)
Sequence modifications
A: 2 - 278 (UniProt: P29016)
PDBExternal DatabaseDetails
Gly 279-expression tag
Ser 280-expression tag
Gly 281-expression tag
Leu 282-expression tag
Asn 283-expression tag
Asp 284-expression tag
Ile 285-expression tag
Phe 286-expression tag
Glu 287-expression tag
Ala 288-expression tag
Gln 289-expression tag
Lys 290-expression tag
Ile 291-expression tag
Glu 292-expression tag
Trp 293-expression tag
His 294-expression tag
Glu 295-expression tag
His 296-expression tag
His 297-expression tag
His 298-expression tag
His 299-expression tag
His 300-expression tag
His 301-expression tag
B: 3 - 101 (UniProt: P61769)
PDBExternal DatabaseDetails
Pro 1-expression tag
Lys 2-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight45505.1
BranchedNumber of molecules2
Total formula weight2081.9
Non-Polymers*Number of molecules10
Total formula weight1771.6
All*Total formula weight49358.7
*Water molecules are not included.

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PDB entries from 2024-07-10

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